C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: density-regulated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166233 Denr-002 ENSMUSG00000023106 10090 + 5:123907489-123927133 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000166233
Transcript ID Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000166233 14.898±1.02 117.807±0.00 16.419±7.37 16.680±4.24 52.690±44.95 72.118±88.22 205.944±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_0002PG CIL_0002PG_0002 CGP 5:123876736-123928832
CIL_0002P9 CIL_0002P9_0002 CGP 5:123907175-123969895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003743 IEA translation initiation factor activity
GO:0005575 ND cellular_component
GO:0006413 IEA translational initiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000280557 DENR-001 protein_coding Homo_sapiens 0 776
ENST00000433096 RP4-785G19.2-001 processed_pseudogene Homo_sapiens 0 634
ENST00000439400 RP13-225O21.5-001 processed_pseudogene Homo_sapiens 0 542
ENST00000455982 DENR-002 protein_coding Homo_sapiens 0 684
ENST00000539463 DENR-004 retained_intron Homo_sapiens 0 326
ENST00000547993 NAP1L1-015 retained_intron Homo_sapiens 0 399
ENST00000552477 RP11-290L1.4-001 processed_pseudogene Homo_sapiens 0 610
ENST00000607331 RP11-269G24.8-001 transcribed_processed_pseudogene Homo_sapiens 0 355

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