C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 38, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088454 Slc38a1-202 ENSMUSG00000023169 10090 - 15:96571418-96642343 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088454
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088454 3.060±1.99 1.529±0.00 2.637±0.37 7.664±1.43 2.643±2.21 4.493±1.32 1.270±0.52 0.672±0.16 0.970±0.87 1.470±0.29 0.090±0.01 4.865±2.97 26.322±9.62 0.227±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YN CIL_0005YN_0002 CGP 15:96411698-96642913
CIL_0005YO CIL_0005YO_0002 CGP 15:96571418-96699698

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IDA plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006868 IDA glutamine transport
GO:0015186 IDA L-glutamine transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0030424 IDA axon
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000398637 SLC38A1-002 protein_coding Homo_sapiens 7e-38 165
ENST00000439706 SLC38A1-003 protein_coding Homo_sapiens 3e-38 165
ENST00000549049 SLC38A1-005 protein_coding Homo_sapiens 3e-38 165

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