C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: 2-oxoglutarate and iron-dependent oxygenase domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023707 Ogfod2 10090 + 5:124112297-124115483 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000024470 Ogfod2-001 124112297-124115483 protein_coding
  ENSMUST00000119269 Ogfod2-002 124112321-124115476 protein_coding
  ENSMUST00000130140 Ogfod2-003 124112321-124115085 retained_intron
  ENSMUST00000131094 Ogfod2-004 124112340-124114374 retained_intron
  ENSMUST00000136955 Ogfod2-006 124113303-124114882 retained_intron
  ENSMUST00000148365 Ogfod2-005 124112850-124114217 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024470ENSMUST00000119269ENSMUST00000130140ENSMUST00000131094ENSMUST00000136955
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024470 12.706±2.61 30.388±2.13 10.076±1.18 12.482±5.33 13.909±2.62 19.325±2.20 6.171±0.45 17.600±2.14 11.192±4.93 10.367±1.36 4.301±0.93 15.668±3.87 9.503±2.40 15.489±4.29
ENSMUST00000119269 N/A N/A N/A N/A 5.037±0.00 5.431±0.18 N/A 3.068±0.40 1.317±0.34 4.414±0.00 1.001±0.08 4.607±0.92 3.165±1.64 4.029±0.45
ENSMUST00000130140 2.968±0.00 8.371±0.83 2.648±0.00 3.228±0.19 3.231±0.99 4.723±0.98 1.124±0.00 2.304±0.53 1.305±0.33 2.063±0.00 N/A 3.888±0.71 1.336±0.00 N/A
ENSMUST00000131094 N/A 27.445±8.86 N/A N/A 8.786±2.05 N/A N/A N/A N/A N/A N/A 12.337±0.16 N/A N/A
ENSMUST00000136955 N/A N/A N/A N/A 1.355±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_0002PC CIL_0002PC_0002 CGP 5:124061530-124115483
CIL_0002P6 CIL_0002P6_0002 CGP 5:124112297-124118196

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005506 IEA iron ion binding
GO:0005575 ND cellular_component
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0031418 IEA L-ascorbic acid binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056211 ogfod2 2-oxoglutarate and iron-dependent oxygenase domain containing 2 protein_coding Danio_rerio
ENSG00000111325 OGFOD2 2-oxoglutarate and iron-dependent oxygenase domain containing 2 protein_coding Homo_sapiens

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