C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat domain 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024037 Wdr4 10090 - 17:31494323-31519974 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000166626 Wdr4-006 31503547-31512278 protein_coding
  ENSMUST00000166992 Wdr4-010 31499448-31503579 retained_intron
  ENSMUST00000167419 Wdr4-005 31503537-31519914 protein_coding
  ENSMUST00000169224 Wdr4-009 31503049-31509912 retained_intron
  ENSMUST00000169454 Wdr4-004 31496126-31501293 retained_intron
  ENSMUST00000170176 Wdr4-002 31494325-31512268 nonsense_mediated_decay
  ENSMUST00000171171 Wdr4-001 31494323-31512751 protein_coding
  ENSMUST00000171291 Wdr4-007 31503526-31519965 protein_coding
  ENSMUST00000171592 Wdr4-008 31512443-31519974 processed_transcript
  ENSMUST00000172284 Wdr4-003 31494323-31512268 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167419ENSMUST00000169454ENSMUST00000170176ENSMUST00000171171ENSMUST00000172284
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167419 N/A 7.296±1.19 N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.764±0.00 N/A N/A
ENSMUST00000169454 7.692±1.32 8.185±1.45 4.946±0.00 3.872±1.47 4.912±0.52 6.521±1.24 1.367±0.37 6.226±0.85 5.893±2.38 3.900±0.74 1.316±0.35 13.215±2.53 7.816±2.26 3.109±1.07
ENSMUST00000170176 N/A N/A N/A N/A 1.608±0.00 N/A N/A N/A N/A N/A 0.324±0.06 N/A N/A N/A
ENSMUST00000171171 4.068±2.46 3.563±1.16 4.142±0.59 4.687±2.73 2.647±0.88 3.273±0.64 0.953±0.13 3.259±0.53 2.626±1.05 2.723±0.83 0.798±0.22 6.667±2.93 2.665±1.24 1.425±0.74
ENSMUST00000172284 2.133±0.70 1.608±0.00 2.148±0.22 2.736±0.87 1.816±0.77 2.699±0.00 1.026±0.16 1.729±0.00 1.392±0.55 1.939±0.78 0.593±0.14 2.062±0.71 0.765±0.17 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0002 VISTA 17:31053737-31653776
CIL_0001D2 CIL_0001D2_0003 CGP 17:31386234-31519974
CIL_0001I2 CIL_0001I2_0002 CGP 17:31494323-31531326

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006400 ISS tRNA modification
GO:0008176 ISS tRNA (guanine-N7-)-methyltransferase activity
GO:0030488 IEA tRNA methylation
GO:0036265 IEA RNA (guanine-N7)-methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074007 wdr4 WD repeat domain 4 protein_coding Danio_rerio
ENSDARG00000090581 FP017279.3 Uncharacterized protein protein_coding Danio_rerio
ENSG00000160193 WDR4 WD repeat domain 4 protein_coding Homo_sapiens

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