C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat domain 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160193 WDR4 9606 - 21:42843094-42879568 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330317 WDR4-004 42843094-42879531 protein_coding
  ENST00000398208 WDR4-001 42849226-42879555 protein_coding
  ENST00000463902 WDR4-005 42855684-42879546 processed_transcript
  ENST00000470658 WDR4-006 42862282-42879510 processed_transcript
  ENST00000476326 WDR4-002 42849226-42879568 processed_transcript
  ENST00000479429 WDR4-007 42854562-42879515 processed_transcript
  ENST00000492742 WDR4-003 42849226-42879275 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000330317ENST00000398208ENST00000470658ENST00000476326ENST00000479429
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000330317 1.339±0.00 2.526±0.00 N/A 0.582±0.40 1.318±0.00 0.799±0.00 0.193±0.14 2.208±0.00 2.392±1.90 N/A 3.389±3.02 2.335±0.40 1.745±0.66
ENST00000398208 N/A N/A N/A N/A N/A N/A N/A N/A 0.079±0.00 1.353±0.00 0.687±0.38 1.028±0.00 0.839±0.07
ENST00000470658 N/A N/A 0.379±0.00 N/A 1.371±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476326 N/A N/A N/A N/A N/A N/A 0.163±0.00 0.179±0.00 N/A N/A N/A 0.574±0.00 N/A
ENST00000479429 1.236±0.00 N/A N/A N/A N/A 1.695±0.00 N/A N/A N/A N/A 1.982±0.00 N/A 1.788±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0001 VISTA 21:42290762-42894212
CIL_0001D2 CIL_0001D2_0002 CGP 21:42653636-42879568
CIL_0001I2 CIL_0001I2_0001 CGP 21:42843094-42913304

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006400 IDA tRNA modification
GO:0008176 IDA tRNA (guanine-N7-)-methyltransferase activity
GO:0030488 IEA tRNA methylation
GO:0036265 IEA RNA (guanine-N7)-methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074007 wdr4 WD repeat domain 4 protein_coding Danio_rerio
ENSDARG00000090581 FP017279.3 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000024037 Wdr4 WD repeat domain 4 protein_coding Mus_musculus

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