C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171171 Wdr4-001 ENSMUSG00000024037 10090 - 17:31494323-31512751 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171171
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171171 4.068±2.46 3.563±1.16 4.142±0.59 4.687±2.73 2.647±0.88 3.273±0.64 0.953±0.13 3.259±0.53 2.626±1.05 2.723±0.83 0.798±0.22 6.667±2.93 2.665±1.24 1.425±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0002 VISTA 17:31053737-31653776
CIL_0001D2 CIL_0001D2_0003 CGP 17:31386234-31519974
CIL_0001I2 CIL_0001I2_0002 CGP 17:31494323-31531326

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006400 ISS tRNA modification
GO:0008176 ISS tRNA (guanine-N7-)-methyltransferase activity
GO:0030488 IEA tRNA methylation
GO:0036265 IEA RNA (guanine-N7)-methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330317 WDR4-004 protein_coding Homo_sapiens 0 979
ENST00000398208 WDR4-001 protein_coding Homo_sapiens 0 979
ENST00000463902 WDR4-005 processed_transcript Homo_sapiens 0 383
ENST00000470658 WDR4-006 processed_transcript Homo_sapiens 0 496
ENST00000476326 WDR4-002 processed_transcript Homo_sapiens 0 676
ENST00000479429 WDR4-007 processed_transcript Homo_sapiens 0 429
ENST00000492742 WDR4-003 processed_transcript Homo_sapiens 0 676
ENST00000603663 RP11-265D19.7-001 processed_pseudogene Homo_sapiens 0 496

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