C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CUGBP, Elav-like family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115816 Celf4-202 ENSMUSG00000024268 10090 - 18:25477632-25753983 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungOvaryTestisENSMUST00000115816
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000115816 1.297±0.36 0.170±0.07 15.494±0.43 0.296±0.04 0.556±0.11 0.090±0.03 0.061±0.05 0.132±0.05 0.189±0.07 0.389±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008E2 CIL_0008E2_0002 VISTA 18:24940595-25541640
CIL_00092R CIL_00092R_0002 VISTA 18:25077370-25678646
CIL_0002FC CIL_0002FC_0003 CGP 18:25168999-25753983
CIL_0007MG CIL_0007MG_0002 UCNEbase 18:25240836-25478294
CIL_0008E3 CIL_0008E3_0002 VISTA 18:25377414-25978414
CIL_0003VI CIL_0003VI_0002 CGP 18:25477632-30348126

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IEA alternative mRNA splicing, via spliceosome
GO:0000381 IEA regulation of alternative mRNA splicing, via spliceosome
GO:0003729 IDA mRNA binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006376 IDA mRNA splice site selection
GO:0042835 ISS BRE binding
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome
GO:0048026 ISS positive regulation of mRNA splicing, via spliceosome
GO:0090394 IMP negative regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000151297 celf4-002 protein_coding Danio_rerio 1.00053e-42 180
ENST00000292672 CELF5-001 protein_coding Homo_sapiens 0 366
ENST00000334293 CELF5-004 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000334919 CELF4-002 protein_coding Homo_sapiens 0 1620
ENST00000361795 CELF4-023 protein_coding Homo_sapiens 0 2218
ENST00000420428 CELF4-201 protein_coding Homo_sapiens 0 2224
ENST00000541430 CELF5-002 protein_coding Homo_sapiens 0 366
ENST00000586009 CELF4-016 protein_coding Homo_sapiens 0 1618
ENST00000587074 CELF4-010 processed_transcript Homo_sapiens 0 532
ENST00000587449 CELF4-012 processed_transcript Homo_sapiens 0 429
ENST00000587657 CELF4-015 protein_coding Homo_sapiens 0 647
ENST00000587819 CELF4-008 protein_coding Homo_sapiens 0 592
ENST00000587911 CELF4-017 protein_coding Homo_sapiens 0 315
ENST00000587924 CELF4-007 protein_coding Homo_sapiens 0 357
ENST00000588350 CELF5-005 nonsense_mediated_decay Homo_sapiens 0 243
ENST00000588591 CELF4-013 protein_coding Homo_sapiens 0 1620
ENST00000588597 CELF4-003 protein_coding Homo_sapiens 0 1454
ENST00000589229 CELF4-009 protein_coding Homo_sapiens 0 859
ENST00000589370 CELF5-009 processed_transcript Homo_sapiens 0 237
ENST00000589386 CELF4-011 protein_coding Homo_sapiens 0 891
ENST00000590011 CELF4-018 processed_transcript Homo_sapiens 0 701
ENST00000590112 CELF4-005 nonsense_mediated_decay Homo_sapiens 0 996
ENST00000591282 CELF4-004 protein_coding Homo_sapiens 0 2093
ENST00000591287 CELF4-001 protein_coding Homo_sapiens 0 2246
ENST00000591421 CELF4-006 retained_intron Homo_sapiens 0 555
ENST00000591483 CELF5-006 retained_intron Homo_sapiens 0 204
ENST00000593271 CELF4-014 protein_coding Homo_sapiens 0 503
ENST00000601019 CELF4-021 protein_coding Homo_sapiens 0 2218
ENST00000601392 CELF4-020 protein_coding Homo_sapiens 0 854
ENST00000603232 CELF4-022 protein_coding Homo_sapiens 0 2204

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