C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (metal ion transporter), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154205 Slc39a6-002 ENSMUSG00000024270 10090 - 18:24582308-24603515 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungMuscleOvaryENSMUST00000154205
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Muscle Ovary
ENSMUST00000154205 1.708±0.50 1.629±0.10 2.057±0.76 1.108±0.34 0.360±0.00 0.644±0.16 2.530±0.07 0.205±0.00 4.474±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003W2 CIL_0003W2_0002 CGP 18:24484962-24603817
CIL_00000T CIL_00000T_0002 CGP 18:24579881-24638830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0016020 IEA membrane
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000037025 slc39a10-001 protein_coding Danio_rerio 6e-27 126
ENST00000269187 SLC39A6-002 protein_coding Homo_sapiens 0 1437
ENST00000440549 SLC39A6-001 protein_coding Homo_sapiens 0 1476
ENST00000590986 SLC39A6-004 protein_coding Homo_sapiens 0 1437

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