C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (metal ion transporter), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070726 Slc39a6-001 ENSMUSG00000024270 10090 - 18:24579881-24603817 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070726
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070726 3.969±2.10 2.523±1.20 6.807±0.77 19.914±8.51 3.358±1.00 1.378±0.50 0.877±0.09 1.642±0.12 0.908±0.68 7.250±1.07 0.402±0.22 5.511±2.19 6.869±2.71 19.479±4.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003W2 CIL_0003W2_0002 CGP 18:24484962-24603817
CIL_00000T CIL_00000T_0002 CGP 18:24579881-24638830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005385 IEA zinc ion transmembrane transporter activity
GO:0005783 IDA endoplasmic reticulum
GO:0005886 ISS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006882 IEA cellular zinc ion homeostasis
GO:0009986 IEA cell surface
GO:0031258 ISS lamellipodium membrane
GO:0071577 ISS zinc ion transmembrane transport
GO:0071578 IEA zinc ion transmembrane import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000037025 slc39a10-001 protein_coding Danio_rerio 1e-26 126
ENST00000269187 SLC39A6-002 protein_coding Homo_sapiens 0 2266
ENST00000440549 SLC39A6-001 protein_coding Homo_sapiens 0 1430
ENST00000590986 SLC39A6-004 protein_coding Homo_sapiens 0 2235

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