C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 52 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024319 Vps52 10090 + 17:33955812-33966984 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025178 Vps52-001 33955812-33966984 protein_coding
  ENSMUST00000172558 Vps52-004 33961111-33962821 retained_intron
  ENSMUST00000173196 Vps52-007 33955915-33965973 protein_coding
  ENSMUST00000173318 Vps52-005 33958057-33960475 retained_intron
  ENSMUST00000173445 Vps52-003 33959009-33960504 retained_intron
  ENSMUST00000174588 Vps52-006 33962389-33966269 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025178ENSMUST00000172558ENSMUST00000173196
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025178 20.461±0.55 21.645±4.42 14.422±2.77 22.453±1.40 17.055±4.77 18.922±3.73 9.758±1.21 11.253±1.16 8.004±3.93 17.136±3.69 11.540±1.48 17.848±4.47 13.143±1.68 12.854±1.67
ENSMUST00000172558 N/A 22.976±1.42 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173196 N/A N/A N/A 26.361±0.00 N/A N/A 5.418±0.00 N/A N/A N/A N/A N/A N/A 11.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AA CIL_0007AA_0002 CGP 17:33951999-33966984

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0010668 IMP ectodermal cell differentiation
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0048611 IMP embryonic ectodermal digestive tract development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009175 vps52 vacuolar protein sorting 52 (yeast) protein_coding Danio_rerio
ENSG00000223501 VPS52 vacuolar protein sorting 52 homolog (S. cerevisiae) protein_coding Homo_sapiens

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