C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 52 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172558 Vps52-004 ENSMUSG00000024319 10090 + 17:33961111-33962821 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalENSMUST00000172558
Transcript ID Adrenal
ENSMUST00000172558 22.976±1.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AA CIL_0007AA_0002 CGP 17:33951999-33966984

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000383210 VPS52-001 protein_coding Homo_sapiens 0 464
ENST00000428608 VPS52-001 protein_coding Homo_sapiens 0 464
ENST00000441058 VPS52-001 protein_coding Homo_sapiens 0 464
ENST00000443860 VPS52-001 protein_coding Homo_sapiens 0 464
ENST00000445902 VPS52-001 protein_coding Homo_sapiens 0 464
ENST00000448042 VPS52-001 protein_coding Homo_sapiens 0 464
ENST00000461168 VPS52-003 retained_intron Homo_sapiens 0 440
ENST00000461476 VPS52-007 nonsense_mediated_decay Homo_sapiens 0 464
ENST00000463636 VPS52-003 retained_intron Homo_sapiens 0 440
ENST00000467430 VPS52-006 processed_transcript Homo_sapiens 0 307
ENST00000470823 VPS52-006 processed_transcript Homo_sapiens 0 307
ENST00000471309 VPS52-006 processed_transcript Homo_sapiens 0 307
ENST00000471761 VPS52-002 processed_transcript Homo_sapiens 0 361
ENST00000475750 VPS52-003 retained_intron Homo_sapiens 0 440
ENST00000475984 VPS52-006 processed_transcript Homo_sapiens 0 307
ENST00000476725 VPS52-007 nonsense_mediated_decay Homo_sapiens 0 464
ENST00000478392 VPS52-007 nonsense_mediated_decay Homo_sapiens 0 464
ENST00000478934 VPS52-002 processed_transcript Homo_sapiens 0 361
ENST00000482399 VPS52-007 protein_coding Homo_sapiens 0 464
ENST00000482849 VPS52-003 processed_transcript Homo_sapiens 0 440
ENST00000483351 VPS52-002 processed_transcript Homo_sapiens 0 361
ENST00000484169 VPS52-003 retained_intron Homo_sapiens 0 440
ENST00000484649 VPS52-002 processed_transcript Homo_sapiens 0 361
ENST00000485137 VPS52-006 processed_transcript Homo_sapiens 0 307
ENST00000488583 VPS52-002 processed_transcript Homo_sapiens 0 361
ENST00000489236 VPS52-002 processed_transcript Homo_sapiens 0 361
ENST00000489636 VPS52-007 retained_intron Homo_sapiens 0 464
ENST00000493379 VPS52-003 retained_intron Homo_sapiens 0 440
ENST00000494723 VPS52-006 processed_transcript Homo_sapiens 0 307
ENST00000497240 VPS52-007 nonsense_mediated_decay Homo_sapiens 0 464

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