C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 52 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025178 Vps52-001 ENSMUSG00000024319 10090 + 17:33955812-33966984 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025178
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025178 20.461±0.55 21.645±4.42 14.422±2.77 22.453±1.40 17.055±4.77 18.922±3.73 9.758±1.21 11.253±1.16 8.004±3.93 17.136±3.69 11.540±1.48 17.848±4.47 13.143±1.68 12.854±1.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AA CIL_0007AA_0002 CGP 17:33951999-33966984

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0010668 IMP ectodermal cell differentiation
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0048611 IMP embryonic ectodermal digestive tract development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000383210 VPS52-001 protein_coding Homo_sapiens 0 2726
ENST00000421357 VPS52-001 protein_coding Homo_sapiens 0 468
ENST00000428608 VPS52-001 protein_coding Homo_sapiens 0 2721
ENST00000441058 VPS52-001 protein_coding Homo_sapiens 0 2726
ENST00000443860 VPS52-001 protein_coding Homo_sapiens 0 2721
ENST00000445902 VPS52-001 protein_coding Homo_sapiens 0 2726
ENST00000448042 VPS52-001 protein_coding Homo_sapiens 0 2726
ENST00000459865 VPS52-010 processed_transcript Homo_sapiens 0 468
ENST00000461168 VPS52-003 retained_intron Homo_sapiens 0 418
ENST00000461476 VPS52-007 nonsense_mediated_decay Homo_sapiens 0 2403
ENST00000461743 VPS52-009 retained_intron Homo_sapiens 0 276
ENST00000462081 VPS52-010 processed_transcript Homo_sapiens 0 569
ENST00000462479 VPS52-007 protein_coding Homo_sapiens 0 468
ENST00000462911 VPS52-005 processed_transcript Homo_sapiens 0 1026
ENST00000463476 VPS52-011 processed_transcript Homo_sapiens 0 841
ENST00000463486 VPS52-005 processed_transcript Homo_sapiens 0 1031
ENST00000463636 VPS52-003 retained_intron Homo_sapiens 0 418
ENST00000464425 VPS52-004 processed_transcript Homo_sapiens 0 706
ENST00000465355 VPS52-010 processed_transcript Homo_sapiens 0 569
ENST00000466566 VPS52-009 retained_intron Homo_sapiens 0 276
ENST00000467000 VPS52-010 processed_transcript Homo_sapiens 0 569
ENST00000467130 VPS52-005 processed_transcript Homo_sapiens 0 1031
ENST00000467430 VPS52-006 processed_transcript Homo_sapiens 0 544
ENST00000470823 VPS52-006 processed_transcript Homo_sapiens 0 544
ENST00000470858 VPS52-011 processed_transcript Homo_sapiens 0 468
ENST00000471309 VPS52-006 processed_transcript Homo_sapiens 0 544
ENST00000471761 VPS52-002 processed_transcript Homo_sapiens 0 1362
ENST00000471922 VPS52-011 processed_transcript Homo_sapiens 0 841
ENST00000472296 VPS52-005 processed_transcript Homo_sapiens 0 1031
ENST00000473365 VPS52-011 processed_transcript Homo_sapiens 0 841
ENST00000474439 VPS52-009 retained_intron Homo_sapiens 0 276
ENST00000475520 VPS52-011 processed_transcript Homo_sapiens 0 841
ENST00000475583 VPS52-009 retained_intron Homo_sapiens 0 276
ENST00000475750 VPS52-003 retained_intron Homo_sapiens 0 418
ENST00000475984 VPS52-006 processed_transcript Homo_sapiens 0 544
ENST00000476725 VPS52-007 nonsense_mediated_decay Homo_sapiens 0 2398
ENST00000478392 VPS52-007 nonsense_mediated_decay Homo_sapiens 0 2398
ENST00000478934 VPS52-002 processed_transcript Homo_sapiens 0 1362
ENST00000479062 VPS52-010 processed_transcript Homo_sapiens 0 569
ENST00000482399 VPS52-007 protein_coding Homo_sapiens 0 2403
ENST00000482849 VPS52-003 processed_transcript Homo_sapiens 0 418
ENST00000483351 VPS52-002 processed_transcript Homo_sapiens 0 1362
ENST00000484169 VPS52-003 retained_intron Homo_sapiens 0 418
ENST00000484649 VPS52-002 processed_transcript Homo_sapiens 0 1362
ENST00000485137 VPS52-006 processed_transcript Homo_sapiens 0 544
ENST00000485418 VPS52-002 processed_transcript Homo_sapiens 0 468
ENST00000485847 VPS52-005 processed_transcript Homo_sapiens 0 1026
ENST00000487611 VPS52-004 processed_transcript Homo_sapiens 0 701
ENST00000487764 VPS52-010 processed_transcript Homo_sapiens 0 569
ENST00000488248 VPS52-009 retained_intron Homo_sapiens 0 276
ENST00000488583 VPS52-002 processed_transcript Homo_sapiens 0 1362
ENST00000489236 VPS52-002 processed_transcript Homo_sapiens 0 1362
ENST00000489636 VPS52-007 retained_intron Homo_sapiens 0 2403
ENST00000490433 VPS52-004 processed_transcript Homo_sapiens 0 706
ENST00000491657 VPS52-005 processed_transcript Homo_sapiens 0 1031
ENST00000492921 VPS52-004 processed_transcript Homo_sapiens 0 706
ENST00000493379 VPS52-003 retained_intron Homo_sapiens 0 418
ENST00000493674 VPS52-011 processed_transcript Homo_sapiens 0 841
ENST00000494064 VPS52-004 processed_transcript Homo_sapiens 0 701
ENST00000494451 VPS52-011 processed_transcript Homo_sapiens 0 841
ENST00000494723 VPS52-006 processed_transcript Homo_sapiens 0 544
ENST00000495981 VPS52-010 processed_transcript Homo_sapiens 0 569
ENST00000497047 VPS52-009 retained_intron Homo_sapiens 0 276
ENST00000497193 VPS52-004 processed_transcript Homo_sapiens 0 706
ENST00000497240 VPS52-007 nonsense_mediated_decay Homo_sapiens 0 2403

Loading