C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: desmocollin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024331 Dsc2 10090 - 18:20030633-20059554 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039247 Dsc2-001 20030633-20059554 protein_coding
  ENSMUST00000075214 Dsc2-002 20030633-20059478 protein_coding
  ENSMUST00000128464 Dsc2-003 20031479-20059509 nonsense_mediated_decay
  ENSMUST00000155407 Dsc2-004 20031343-20038139 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039247ENSMUST00000075214ENSMUST00000128464ENSMUST00000155407
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039247 0.431±0.00 N/A 1.619±0.18 0.055±0.03 0.771±0.00 N/A 1.852±0.25 0.454±0.00 0.694±0.22 N/A 0.100±0.04 1.318±0.46 10.748±2.79 N/A
ENSMUST00000075214 1.389±0.24 0.895±0.19 1.116±0.04 0.126±0.07 0.636±0.11 17.676±7.19 4.577±0.92 0.477±0.16 5.179±3.02 2.176±1.29 0.065±0.04 1.776±0.78 11.982±3.82 0.109±0.03
ENSMUST00000128464 0.406±0.51 0.439±0.31 N/A 0.122±0.06 1.347±0.46 5.669±1.37 5.547±0.78 0.152±0.05 2.003±0.85 2.042±1.28 N/A 1.304±0.89 17.947±16.44 0.029±0.01
ENSMUST00000155407 N/A 0.705±0.23 0.692±0.00 0.247±0.00 N/A N/A N/A N/A N/A 2.190±0.00 0.018±0.00 1.426±0.51 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EN CIL_0006EN_0002 CGP 18:19960930-20059554
CIL_0006EM CIL_0006EM_0002 CGP 18:20030633-20114773

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0005913 IDA cell-cell adherens junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0009267 IEP cellular response to starvation
GO:0014704 IEA intercalated disc
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030057 IDA desmosome
GO:0031410 IEA cytoplasmic vesicle
GO:0070062 IEA extracellular vesicular exosome
GO:0086005 IEA ventricular cardiac muscle cell action potential
GO:0086042 IEA cardiac muscle cell-cardiac muscle cell adhesion
GO:0086069 IEA bundle of His cell to Purkinje myocyte communication
GO:0086091 IEA regulation of heart rate by cardiac conduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039677 dsc2l desmocollin 2 like protein_coding Danio_rerio
ENSG00000134755 DSC2 desmocollin 2 protein_coding Homo_sapiens

Loading