C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmocollin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039247 Dsc2-001 ENSMUSG00000024331 10090 - 18:20030633-20059554 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000039247
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000039247 0.431±0.00 1.619±0.18 0.055±0.03 0.771±0.00 1.852±0.25 0.454±0.00 0.694±0.22 0.100±0.04 1.318±0.46 10.748±2.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EN CIL_0006EN_0002 CGP 18:19960930-20059554
CIL_0006EM CIL_0006EM_0002 CGP 18:20030633-20114773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0005913 IDA cell-cell adherens junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0009267 IEP cellular response to starvation
GO:0014704 IEA intercalated disc
GO:0016021 IEA integral component of membrane
GO:0030057 IDA desmosome
GO:0031410 IEA cytoplasmic vesicle
GO:0070062 IEA extracellular vesicular exosome
GO:0086005 IEA ventricular cardiac muscle cell action potential
GO:0086042 IEA cardiac muscle cell-cardiac muscle cell adhesion
GO:0086069 IEA bundle of His cell to Purkinje myocyte communication
GO:0086091 IEA regulation of heart rate by cardiac conduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251081 DSC2-002 protein_coding Homo_sapiens 0 1925
ENST00000257197 DSC1-001 protein_coding Homo_sapiens 2e-31 143
ENST00000280904 DSC2-001 protein_coding Homo_sapiens 0 1709

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