C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pleckstrin and Sec7 domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024347 Psd2 10090 + 18:35964830-36014715 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000115716 Psd2-001 35964830-36014712 protein_coding
  ENSMUST00000175720 Psd2-006 35987019-36006084 retained_intron
  ENSMUST00000175734 Psd2-005 35965105-36014674 protein_coding
  ENSMUST00000176472 Psd2-002 35965102-36014580 nonsense_mediated_decay
  ENSMUST00000176873 Psd2-004 35965065-36014712 protein_coding
  ENSMUST00000177432 Psd2-003 35965067-36014715 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115716ENSMUST00000175720ENSMUST00000175734ENSMUST00000176472ENSMUST00000176873ENSMUST00000177432
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115716 0.136±0.04 N/A 0.823±0.00 N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A 0.103±0.00 N/A 0.087±0.03
ENSMUST00000175720 N/A N/A N/A N/A N/A N/A N/A 0.155±0.04 0.087±0.05 N/A N/A N/A 0.069±0.01 N/A
ENSMUST00000175734 0.480±0.10 0.052±0.00 N/A 8.307±0.00 0.512±0.03 0.160±0.02 N/A 0.073±0.03 0.027±0.00 N/A 0.043±0.00 0.222±0.15 N/A 0.160±0.00
ENSMUST00000176472 N/A 0.223±0.13 N/A 5.141±0.00 0.148±0.00 0.099±0.03 0.026±0.01 0.128±0.01 0.012±0.00 0.104±0.00 0.025±0.01 0.273±0.19 0.113±0.10 0.123±0.03
ENSMUST00000176873 N/A N/A 2.302±1.25 15.798±2.70 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177432 0.175±0.00 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053Z CIL_00053Z_0002 CGP 18:35829818-36014715
CIL_000540 CIL_000540_0002 CGP 18:35964830-36197380

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005086 IBA ARF guanyl-nucleotide exchange factor activity
GO:0005543 IEA phospholipid binding
GO:0016021 IEA integral component of membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0030425 IDA dendrite
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043025 IDA neuronal cell body
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063036 BX005008.2 Uncharacterized protein protein_coding Danio_rerio
ENSG00000146005 PSD2 pleckstrin and Sec7 domain containing 2 protein_coding Homo_sapiens

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