C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleckstrin and Sec7 domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000175734 Psd2-005 ENSMUSG00000024347 10090 + 18:35965105-36014674 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverMuscleOvaryTestisENSMUST00000175734
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Testis
ENSMUST00000175734 0.480±0.10 0.052±0.00 8.307±0.00 0.512±0.03 0.160±0.02 0.073±0.03 0.027±0.00 0.043±0.00 0.222±0.15 0.160±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053Z CIL_00053Z_0002 CGP 18:35829818-36014715
CIL_000540 CIL_000540_0002 CGP 18:35964830-36197380

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005086 IBA ARF guanyl-nucleotide exchange factor activity
GO:0005543 IEA phospholipid binding
GO:0016021 IEA integral component of membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0030425 IDA dendrite
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043025 IDA neuronal cell body
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128055 CABZ01075947.1-201 protein_coding Danio_rerio 2e-21 110
ENST00000274710 PSD2-001 protein_coding Homo_sapiens 0 2543

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