C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00053Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171604-ENSG00000146005 CGP 9606 5:139647299-139844466
GeneTranscriptPositionBiotype
ENSG00000146005 (PSD2)
pleckstrin and Sec7 domain containing 2 		ENST00000274710 (PSD2-001) 139795821-139844466 protein_coding
ENSG00000171604 (CXXC5)
CXXC finger protein 5 		ENST00000302517 (CXXC5-001) 139648292-139683882 protein_coding
ENST00000502295 (CXXC5-005) 139647299-139680729 protein_coding
ENST00000502336 (CXXC5-011) 139648925-139680765 protein_coding
ENST00000502716 (CXXC5-014) 139675436-139681066 protein_coding
ENST00000503511 (CXXC5-016) 139675443-139680773 protein_coding
ENST00000504844 (CXXC5-010) 139648712-139681006 protein_coding
ENST00000504944 (CXXC5-006) 139647904-139680830 protein_coding
ENST00000505812 (CXXC5-012) 139682994-139683578 processed_transcript
ENST00000507139 (CXXC5-009) 139648661-139680556 protein_coding
ENST00000509238 (CXXC5-008) 139659555-139680818 protein_coding
ENST00000511048 (CXXC5-002) 139648933-139683593 protein_coding
ENST00000511457 (CXXC5-017) 139675474-139681113 protein_coding
ENST00000511591 (CXXC5-013) 139679683-139680547 protein_coding
ENST00000512816 (CXXC5-007) 139650989-139680743 protein_coding
ENST00000515038 (CXXC5-015) 139680958-139683111 processed_transcript
ENST00000520967 (CXXC5-018) 139648929-139680936 protein_coding
ENSG00000200756 (RNU6-236P)
RNA, U6 small nuclear 236, pseudogene 		ENST00000363886 (RNU6-236P-201) 139717985-139718090 snRNA
ENSG00000249131 (CTB-35F21.2)
 ENST00000515306 (CTB-35F21.2-001) 139741349-139746223 lincRNA
ENSG00000249526 (CTB-35F21.1)
 ENST00000515296 (CTB-35F21.1-001) 139684645-139745010 lincRNA
ENSG00000251387 (CTB-35F21.3)
 ENST00000506892 (CTB-35F21.3-001) 139772528-139775406 lincRNA
ENSG00000271792 (CTB-35F21.5)
 ENST00000607370 (CTB-35F21.5-001) 139775305-139775472 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_00053Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046668-ENSMUSG00000024347 CGP 10090 18:35829818-36014715
GeneTranscriptPositionBiotype
ENSMUSG00000024347 (Psd2)
pleckstrin and Sec7 domain containing 2 		ENSMUST00000115716 (Psd2-001) 35964830-36014712 protein_coding
ENSMUST00000175720 (Psd2-006) 35987019-36006084 retained_intron
ENSMUST00000175734 (Psd2-005) 35965105-36014674 protein_coding
ENSMUST00000176472 (Psd2-002) 35965102-36014580 nonsense_mediated_decay
ENSMUST00000176873 (Psd2-004) 35965065-36014712 protein_coding
ENSMUST00000177432 (Psd2-003) 35965067-36014715 protein_coding
ENSMUSG00000046668 (Cxxc5)
CXXC finger 5 		ENSMUST00000060722 (Cxxc5-201) 35829818-35861687 protein_coding
ENSMUSG00000100320 (RP24-326K11.2)
predicted gene 29417 		ENSMUST00000188160 (RP24-326K11.2-001) 35830389-35831093 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00053Z_0001ENSG00000146005ENST00000274710ENSG00000171604ENST00000302517ENST00000502295ENST00000502336ENST00000502716ENST00000503511ENST00000504844ENST00000504944ENST00000505812ENST00000507139ENST00000509238ENST00000511048ENST00000511457ENST00000511591ENST00000512816ENST00000515038ENST00000520967ENSG00000200756ENST00000363886ENSG00000249131ENST00000515306ENSG00000249526ENST00000515296ENSG00000251387ENST00000506892ENSG00000271792ENST00000607370CIL_00053Z_0002ENSMUSG00000024347ENSMUST00000115716ENSMUST00000175720ENSMUST00000175734ENSMUST00000176472ENSMUST00000176873ENSMUST00000177432ENSMUSG00000046668ENSMUST00000060722ENSMUSG00000100320ENSMUST00000188160
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00053Z_0001ENSG00000146005ENST00000274710ENSG00000171604ENST00000302517ENST00000502295ENST00000511048ENST00000515038ENST00000520967ENSG00000200756ENST00000363886ENSG00000249131ENST00000515306ENSG00000249526ENST00000515296ENSG00000251387ENST00000506892ENSG00000271792ENST00000607370CIL_00053Z_0002ENSMUSG00000024347ENSMUST00000115716ENSMUST00000175720ENSMUST00000175734ENSMUST00000176472ENSMUST00000176873ENSMUST00000177432ENSMUSG00000046668ENSMUST00000060722ENSMUSG00000100320ENSMUST00000188160
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146005 ENST00000274710 0.016±0.00 0.042±0.00 N/A 18.222±12.83 0.148±0.01 0.061±0.00 N/A 0.011±0.00 0.033±0.01 0.037±0.00 0.053±0.00 0.090±0.04 0.072±0.04 0.720±0.32
ENSG00000171604 ENST00000302517 2.872±0.00 5.871±0.00 N/A 13.469±7.68 6.622±3.91 3.415±2.11 4.111±3.30 22.662±21.13 14.624±13.84 9.041±7.88 9.276±7.26 2.003±1.41 3.999±0.43 3.270±0.00
ENST00000502295 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.446±0.00 9.463±0.00 4.566±0.00 N/A N/A
ENST00000502336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511048 2.298±0.00 N/A 2.494±0.00 6.585±0.00 3.052±1.90 1.842±0.00 0.414±0.00 2.544±0.00 2.226±0.00 N/A 0.752±0.00 4.550±2.08 5.219±0.00 8.636±0.00
ENST00000511457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515038 N/A N/A 4.136±0.00 N/A N/A N/A 1.267±0.00 N/A N/A N/A 2.986±0.00 N/A N/A 22.565±0.00
ENST00000520967 N/A N/A N/A N/A N/A 2.035±0.00 N/A N/A N/A 1.190±0.00 N/A N/A N/A N/A
ENSG00000200756 ENST00000363886 N/A N/A N/A 0.158±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.291±0.00
ENSG00000249131 ENST00000515306 N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.671±0.15
ENSG00000249526 ENST00000515296 N/A N/A N/A 0.414±0.15 N/A N/A N/A N/A 0.103±0.00 0.225±0.00 N/A 0.054±0.00 N/A 0.035±0.00
ENSG00000251387 ENST00000506892 N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A 0.476±0.00 N/A N/A N/A 0.154±0.07
ENSG00000271792 ENST00000607370 N/A N/A N/A 0.275±0.00 0.487±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024347 ENSMUST00000115716 0.136±0.04 N/A 0.823±0.00 N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A 0.103±0.00 N/A 0.087±0.03
ENSMUST00000175720 N/A N/A N/A N/A N/A N/A N/A 0.155±0.04 0.087±0.05 N/A N/A N/A 0.069±0.01 N/A
ENSMUST00000175734 0.480±0.10 0.052±0.00 N/A 8.307±0.00 0.512±0.03 0.160±0.02 N/A 0.073±0.03 0.027±0.00 N/A 0.043±0.00 0.222±0.15 N/A 0.160±0.00
ENSMUST00000176472 N/A 0.223±0.13 N/A 5.141±0.00 0.148±0.00 0.099±0.03 0.026±0.01 0.128±0.01 0.012±0.00 0.104±0.00 0.025±0.01 0.273±0.19 0.113±0.10 0.123±0.03
ENSMUST00000176873 N/A N/A 2.302±1.25 15.798±2.70 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177432 0.175±0.00 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000046668 ENSMUST00000060722 8.731±4.43 6.870±1.78 5.708±1.94 15.653±5.23 6.889±4.17 3.132±0.91 2.413±0.00 31.451±4.11 9.992±2.85 3.136±1.16 3.566±1.62 8.893±4.91 16.827±6.91 9.782±5.70
ENSMUSG00000100320 ENSMUST00000188160 0.247±0.00 0.169±0.03 N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A 0.193±0.05 0.461±0.33 0.188±0.07 0.130±0.04

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