C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleckstrin and Sec7 domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176472 Psd2-002 ENSMUSG00000024347 10090 + 18:35965102-36014580 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000176472
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000176472 0.223±0.13 5.141±0.00 0.148±0.00 0.099±0.03 0.026±0.01 0.128±0.01 0.012±0.00 0.104±0.00 0.025±0.01 0.273±0.19 0.113±0.10 0.123±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053Z CIL_00053Z_0002 CGP 18:35829818-36014715
CIL_000540 CIL_000540_0002 CGP 18:35964830-36197380

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005086 IBA ARF guanyl-nucleotide exchange factor activity
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0030425 IDA dendrite
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043025 IDA neuronal cell body
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128055 CABZ01075947.1-201 protein_coding Danio_rerio 1e-22 113
ENST00000274710 PSD2-001 protein_coding Homo_sapiens 0 1633

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