C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 23 (nucleobase transporters), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025212 Slc23a1-001 ENSMUSG00000024354 10090 - 18:35614604-35627244 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000025212
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000025212 0.116±0.04 1.250±0.10 0.296±0.12 0.179±0.07 0.037±0.01 0.059±0.04 18.390±2.00 4.290±2.43 0.039±0.02 3.514±1.71 3.463±4.26 0.170±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D0 CIL_0005D0_0002 CGP 18:35562146-35617186
CIL_000542 CIL_000542_0002 CGP 18:35598617-35627244
CIL_000543 CIL_000543_0002 CGP 18:35614604-35649367

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005886 ISS plasma membrane
GO:0005903 IEA brush border
GO:0006814 ISS sodium ion transport
GO:0007420 IMP brain development
GO:0008520 IEA L-ascorbate:sodium symporter activity
GO:0009636 ISS response to toxic substance
GO:0009925 IDA basal plasma membrane
GO:0015081 ISS sodium ion transmembrane transporter activity
GO:0015229 IMP L-ascorbic acid transporter activity
GO:0015882 IMP L-ascorbic acid transport
GO:0016021 IEA integral component of membrane
GO:0016324 ISS apical plasma membrane
GO:0030324 IMP lung development
GO:0033300 ISS dehydroascorbic acid transporter activity
GO:0035461 ISS vitamin transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0043229 ISS intracellular organelle
GO:0070062 IEA extracellular vesicular exosome
GO:0070837 ISS dehydroascorbic acid transport
GO:0070890 ISS sodium-dependent L-ascorbate transmembrane transporter activity
GO:0070904 ISS transepithelial L-ascorbic acid transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000348729 SLC23A1-001 protein_coding Homo_sapiens 0 2039
ENST00000353963 SLC23A1-002 protein_coding Homo_sapiens 0 1984
ENST00000503919 SLC23A1-007 processed_transcript Homo_sapiens 0 425
ENST00000506512 SLC23A1-008 retained_intron Homo_sapiens 0 211
ENST00000508270 SLC23A1-005 protein_coding Homo_sapiens 0 309

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