C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein S18B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024436 Mrps18b 10090 - 17:35910379-35916389 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025305 Mrps18b-001 35910379-35916389 protein_coding
  ENSMUST00000113782 Mrps18b-002 35910379-35916389 protein_coding
  ENSMUST00000172642 Mrps18b-004 35911441-35916323 protein_coding
  ENSMUST00000173737 Mrps18b-006 35910503-35912566 retained_intron
  ENSMUST00000173792 Mrps18b-008 35914561-35916203 processed_transcript
  ENSMUST00000174349 Mrps18b-003 35910851-35916337 protein_coding
  ENSMUST00000174574 Mrps18b-007 35913789-35916377 retained_intron
  ENSMUST00000174807 Mrps18b-005 35910386-35916330 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025305ENSMUST00000113782ENSMUST00000174807
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025305 51.433±4.58 52.490±9.51 56.218±13.05 43.920±7.85 46.374±7.30 37.668±2.60 56.678±5.83 51.326±11.68 18.802±1.49 26.722±1.04 40.810±7.51 95.062±19.00 53.143±2.18
ENSMUST00000113782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.553±0.00 50.953±6.18 36.051±0.00
ENSMUST00000174807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.063±0.00 63.303±9.38 27.105±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0030054 IEA cell junction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007065 mrps18b mitochondrial ribosomal protein S18B protein_coding Danio_rerio
ENSG00000204568 MRPS18B mitochondrial ribosomal protein S18B protein_coding Homo_sapiens

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