C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retina and anterior neural fold homeobox
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024518 Rax 10090 - 18:65934639-65939089 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025396 Rax-201 65934639-65939089 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025396
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025396 0.023±0.01 0.042±0.00 0.008±0.00 0.125±0.00 0.017±0.00 0.095±0.07 0.024±0.01 0.034±0.00 0.005±0.00 0.024±0.01 0.057±0.01 0.050±0.02 0.017±0.02 0.045±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071E CIL_00071E_0002 CGP 18:65872820-65939089
CIL_0007FD CIL_0007FD_0002 CGP 18:65934639-65970178

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007389 IMP pattern specification process
GO:0007420 IMP brain development
GO:0021854 IMP hypothalamus development
GO:0043010 IMP camera-type eye development
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060173 IMP limb development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052893 rx3 retinal homeobox gene 3 protein_coding Danio_rerio
ENSG00000134438 RAX retina and anterior neural fold homeobox protein_coding Homo_sapiens

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