C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retina and anterior neural fold homeobox
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025396 Rax-201 ENSMUSG00000024518 10090 - 18:65934639-65939089 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025396
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025396 0.023±0.01 0.042±0.00 0.008±0.00 0.125±0.00 0.017±0.00 0.095±0.07 0.024±0.01 0.034±0.00 0.005±0.00 0.024±0.01 0.057±0.01 0.050±0.02 0.017±0.02 0.045±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071E CIL_00071E_0002 CGP 18:65872820-65939089
CIL_0007FD CIL_0007FD_0002 CGP 18:65934639-65970178

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007389 IMP pattern specification process
GO:0007420 IMP brain development
GO:0021854 IMP hypothalamus development
GO:0043010 IMP camera-type eye development
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060173 IMP limb development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256852 RAX-002 protein_coding Homo_sapiens 0 475
ENST00000334889 RAX-001 protein_coding Homo_sapiens 0 1031
ENST00000555288 RAX-003 protein_coding Homo_sapiens 0 261

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