C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retina and anterior neural fold homeobox
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134438 RAX 9606 - 18:59267035-59274086 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000256852 RAX-002 59267035-59273385 protein_coding
  ENST00000334889 RAX-001 59267035-59273393 protein_coding
  ENST00000555288 RAX-003 59272985-59274086 protein_coding
  ENST00000591550 RAX-004 59272418-59272920 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartTestisENST00000256852ENST00000555288
Transcript ID Brain Heart Testis
ENST00000256852 0.155±0.00 N/A 0.051±0.01
ENST00000555288 N/A 0.105±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071E CIL_00071E_0001 CGP 18:59220168-59274086
CIL_0007FD CIL_0007FD_0001 CGP 18:59267035-59318649

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007389 IEA pattern specification process
GO:0007420 IEA brain development
GO:0007601 TAS visual perception
GO:0021854 IEA hypothalamus development
GO:0043010 IEA camera-type eye development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060173 IEA limb development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000024518 Rax retina and anterior neural fold homeobox protein_coding Mus_musculus

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