C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphodiesterase 6A, cGMP-specific, rod, alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024575 Pde6a 10090 + 18:61220482-61289924 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025468 Pde6a-001 61220482-61289924 protein_coding
  ENSMUST00000135688 Pde6a-002 61275023-61289924 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025468ENSMUST00000135688
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025468 0.015±0.00 0.042±0.01 0.015±0.00 0.006±0.00 N/A 0.114±0.06 N/A 0.660±0.08 0.008±0.01 0.021±0.00 0.019±0.00 0.100±0.06 0.038±0.02 0.067±0.03
ENSMUST00000135688 0.034±0.02 0.119±0.03 0.050±0.00 0.062±0.08 0.073±0.07 0.162±0.07 0.028±0.02 0.446±0.23 0.044±0.03 0.015±0.01 0.023±0.01 0.182±0.11 0.059±0.03 0.177±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0007165 IEA signal transduction
GO:0046037 IEA GMP metabolic process
GO:0046872 IEA metal ion binding
GO:0047555 IEA 3',5'-cyclic-GMP phosphodiesterase activity
GO:0051480 IEA cytosolic calcium ion homeostasis
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000380 pde6a phosphodiesterase 6A, cGMP-specific, rod, alpha protein_coding Danio_rerio
ENSG00000132915 PDE6A phosphodiesterase 6A, cGMP-specific, rod, alpha protein_coding Homo_sapiens

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