C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 6A, cGMP-specific, rod, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025468 Pde6a-001 ENSMUSG00000024575 10090 + 18:61220482-61289924 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025468
Transcript ID Adipose Adrenal Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025468 0.015±0.00 0.042±0.01 0.015±0.00 0.006±0.00 0.114±0.06 0.660±0.08 0.008±0.01 0.021±0.00 0.019±0.00 0.100±0.06 0.038±0.02 0.067±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007165 IEA signal transduction
GO:0046037 IEA GMP metabolic process
GO:0046872 IEA metal ion binding
GO:0047555 IEA 3',5'-cyclic-GMP phosphodiesterase activity
GO:0051480 IEA cytosolic calcium ion homeostasis
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000000392 pde6a-001 protein_coding Danio_rerio 0 1092
ENST00000255266 PDE6A-001 protein_coding Homo_sapiens 0 3033
ENST00000508173 PDE6A-002 retained_intron Homo_sapiens 0 1511
ENST00000512670 PDE6A-003 retained_intron Homo_sapiens 4e-25 121
ENST00000613228 PDE6A-201 protein_coding Homo_sapiens 0 2163
ENST00000617647 PDE6A-202 protein_coding Homo_sapiens 0 2163

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