C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphodiesterase 6A, cGMP-specific, rod, alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132915 PDE6A 9606 - 5:149857955-149944793 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000255266 PDE6A-001 149857956-149944793 protein_coding
  ENST00000508173 PDE6A-002 149857956-149944793 retained_intron
  ENST00000512670 PDE6A-003 149860654-149867892 retained_intron
  ENST00000613228 PDE6A-201 149857957-149944793 protein_coding
  ENST00000617647 PDE6A-202 149857955-149944793 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000508173ENST00000512670ENST00000613228ENST00000617647
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000508173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 0.059±0.00 N/A
ENST00000512670 N/A N/A 0.025±0.00 0.017±0.00 N/A N/A 0.042±0.00 N/A N/A 0.041±0.00 N/A N/A N/A N/A
ENST00000613228 0.109±0.00 0.154±0.00 0.017±0.00 0.042±0.02 0.048±0.03 N/A 0.056±0.01 0.097±0.00 0.055±0.00 0.069±0.02 0.007±0.00 0.098±0.00 0.011±0.00 1.288±0.00
ENST00000617647 N/A N/A N/A 0.046±0.04 0.039±0.00 0.045±0.00 N/A N/A N/A 0.016±0.00 N/A 0.034±0.00 0.041±0.02 0.429±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JR CIL_0001JR_0002 CGP 5:149730298-149944793

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004114 IEA 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0007165 IEA signal transduction
GO:0007601 IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0016056 TAS rhodopsin mediated signaling pathway
GO:0022400 TAS regulation of rhodopsin mediated signaling pathway
GO:0046037 IMP GMP metabolic process
GO:0046872 IEA metal ion binding
GO:0047555 IMP 3',5'-cyclic-GMP phosphodiesterase activity
GO:0051480 IMP cytosolic calcium ion homeostasis
GO:0060041 IEA retina development in camera-type eye
GO:0097381 TAS photoreceptor disc membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000380 pde6a phosphodiesterase 6A, cGMP-specific, rod, alpha protein_coding Danio_rerio
ENSMUSG00000024575 Pde6a phosphodiesterase 6A, cGMP-specific, rod, alpha protein_coding Mus_musculus

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