C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Treacher Collins Franceschetti syndrome 1, homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000175934 Tcof1-005 ENSMUSG00000024613 10090 - 18:60813755-60848929 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000175934
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000175934 1.744±0.63 0.432±0.07 2.523±0.00 2.417±0.13 1.575±0.75 1.437±0.56 0.713±0.15 0.812±0.23 1.873±1.38 0.845±0.34 2.243±0.97 2.870±1.67 5.854±5.51 2.538±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0002 VISTA 18:60604549-61207221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0042790 IMP transcription of nuclear large rRNA transcript from RNA polymerase I promoter
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323668 TCOF1-001 protein_coding Homo_sapiens 0 444
ENST00000377797 TCOF1-201 protein_coding Homo_sapiens 0 483
ENST00000394269 TCOF1-004 protein_coding Homo_sapiens 0 473
ENST00000427724 TCOF1-015 protein_coding Homo_sapiens 0 473
ENST00000439160 TCOF1-002 protein_coding Homo_sapiens 0 473
ENST00000445265 TCOF1-003 protein_coding Homo_sapiens 0 444
ENST00000504761 TCOF1-014 protein_coding Homo_sapiens 0 473
ENST00000513346 TCOF1-008 protein_coding Homo_sapiens 0 473
ENST00000515035 TCOF1-006 retained_intron Homo_sapiens 0.000000000000003 90
ENST00000515516 TCOF1-011 protein_coding Homo_sapiens 0 263

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