C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Treacher Collins Franceschetti syndrome 1, homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177172 Tcof1-004 ENSMUSG00000024613 10090 - 18:60818030-60848918 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMuscleOvaryTestisENSMUST00000177172
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Ovary Testis
ENSMUST00000177172 0.789±0.28 0.866±0.36 1.267±0.11 0.824±0.21 0.637±0.00 0.446±0.00 0.737±0.00 1.113±0.00 1.158±0.27 0.573±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0002 VISTA 18:60604549-61207221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0042790 IMP transcription of nuclear large rRNA transcript from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323668 TCOF1-001 protein_coding Homo_sapiens 0 435
ENST00000377797 TCOF1-201 protein_coding Homo_sapiens 0 473
ENST00000394269 TCOF1-004 protein_coding Homo_sapiens 0 473
ENST00000427724 TCOF1-015 protein_coding Homo_sapiens 0 473
ENST00000439160 TCOF1-002 protein_coding Homo_sapiens 0 473
ENST00000445265 TCOF1-003 protein_coding Homo_sapiens 0 435
ENST00000504761 TCOF1-014 protein_coding Homo_sapiens 0 473
ENST00000513346 TCOF1-008 protein_coding Homo_sapiens 0 473
ENST00000515035 TCOF1-006 retained_intron Homo_sapiens 0.000000000000003 90
ENST00000515516 TCOF1-011 protein_coding Homo_sapiens 0 263

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