C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: programmed cell death 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024975 Pdcd4 10090 + 19:53892231-53929861 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025931 Pdcd4-201 53903351-53929861 protein_coding
  ENSMUST00000074371 Pdcd4-202 53892231-53929861 protein_coding
  ENSMUST00000165617 Pdcd4-203 53903351-53929861 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025931ENSMUST00000074371ENSMUST00000165617
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025931 10.948±1.75 3.684±0.26 37.149±2.92 10.313±0.37 9.547±2.39 6.642±1.57 3.878±0.29 7.016±1.61 10.660±4.45 6.507±0.62 3.457±0.24 9.102±4.34 15.990±4.44 7.762±1.30
ENSMUST00000074371 N/A 3.047±0.00 N/A N/A N/A N/A N/A N/A 3.725±0.16 N/A N/A N/A N/A N/A
ENSMUST00000165617 12.274±2.64 4.201±0.00 17.518±0.00 74.333±0.00 N/A 7.917±0.41 N/A N/A N/A N/A N/A 20.383±32.60 25.779±17.83 56.459±72.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0002 VISTA 19:53415569-54017446
CIL_0000UM CIL_0000UM_0002 CGP 19:53677306-53929861

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005829 ISS cytosol
GO:0006915 IEA apoptotic process
GO:0007569 ISS cell aging
GO:0043508 ISS negative regulation of JUN kinase activity
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041022 pdcd4b programmed cell death 4b protein_coding Danio_rerio
ENSG00000150593 PDCD4 programmed cell death 4 (neoplastic transformation inhibitor) protein_coding Homo_sapiens

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