C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025931 Pdcd4-201 ENSMUSG00000024975 10090 + 19:53903351-53929861 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025931
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025931 10.948±1.75 3.684±0.26 37.149±2.92 10.313±0.37 9.547±2.39 6.642±1.57 3.878±0.29 7.016±1.61 10.660±4.45 6.507±0.62 3.457±0.24 9.102±4.34 15.990±4.44 7.762±1.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0002 VISTA 19:53415569-54017446
CIL_0000UM CIL_0000UM_0002 CGP 19:53677306-53929861

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005829 ISS cytosol
GO:0006915 IEA apoptotic process
GO:0007569 ISS cell aging
GO:0043508 ISS negative regulation of JUN kinase activity
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000280154 PDCD4-001 protein_coding Homo_sapiens 0 2021
ENST00000393104 PDCD4-201 protein_coding Homo_sapiens 0 1790
ENST00000444997 PDCD4-004 protein_coding Homo_sapiens 0 782
ENST00000462577 PDCD4-006 processed_transcript Homo_sapiens 0 688
ENST00000467574 PDCD4-002 processed_transcript Homo_sapiens 0 736
ENST00000481353 PDCD4-007 processed_transcript Homo_sapiens 0 822
ENST00000483595 PDCD4-009 processed_transcript Homo_sapiens 0 584
ENST00000483670 PDCD4-003 processed_transcript Homo_sapiens 0 599
ENST00000489049 PDCD4-008 processed_transcript Homo_sapiens 0 433
ENST00000492932 PDCD4-005 processed_transcript Homo_sapiens 0 782
ENST00000498367 PDCD4-010 processed_transcript Homo_sapiens 0 490

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