C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: soc-2 (suppressor of clear) homolog (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024976 Shoc2 10090 + 19:53944306-54033268 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025932 Shoc2-201 53944876-54033268 protein_coding
  ENSMUST00000169861 Shoc2-202 53944306-54033268 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025932ENSMUST00000169861
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025932 7.862±3.03 4.088±0.63 12.946±0.00 13.805±0.16 8.785±2.33 10.587±1.77 5.141±2.32 5.770±2.12 4.115±1.26 7.093±3.01 3.863±1.73 9.965±2.08 7.879±2.99 3.869±0.35
ENSMUST00000169861 N/A 2.639±0.39 N/A 3.698±0.00 8.199±5.59 3.891±1.15 N/A 5.307±0.69 4.251±1.47 N/A N/A 5.895±2.63 10.744±2.40 4.164±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0002 VISTA 19:53415569-54017446
CIL_0006FA CIL_0006FA_0002 CGP 19:53944306-54048982

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000164 ISS protein phosphatase type 1 complex
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0019903 ISS protein phosphatase binding
GO:0046579 ISS positive regulation of Ras protein signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040853 shoc2 soc-2 suppressor of clear homolog (C. elegans) protein_coding Danio_rerio
ENSG00000108061 SHOC2 soc-2 suppressor of clear homolog (C. elegans) protein_coding Homo_sapiens

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