C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: soc-2 (suppressor of clear) homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025932 Shoc2-201 ENSMUSG00000024976 10090 + 19:53944876-54033268 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025932
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025932 7.862±3.03 4.088±0.63 12.946±0.00 13.805±0.16 8.785±2.33 10.587±1.77 5.141±2.32 5.770±2.12 4.115±1.26 7.093±3.01 3.863±1.73 9.965±2.08 7.879±2.99 3.869±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0002 VISTA 19:53415569-54017446
CIL_0006FA CIL_0006FA_0002 CGP 19:53944306-54048982

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000164 ISS protein phosphatase type 1 complex
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0019903 ISS protein phosphatase binding
GO:0046579 ISS positive regulation of Ras protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265277 SHOC2-201 protein_coding Homo_sapiens 0 2235
ENST00000369452 SHOC2-001 protein_coding Homo_sapiens 0 3557
ENST00000451838 SHOC2-002 protein_coding Homo_sapiens 0 2235
ENST00000480155 SHOC2-005 processed_transcript Homo_sapiens 0 379
ENST00000489390 SHOC2-003 processed_transcript Homo_sapiens 0 1029
ENST00000489783 SHOC2-004 processed_transcript Homo_sapiens 0 625
ENST00000497305 SHOC2-006 processed_transcript Homo_sapiens 0 257

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