C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006FA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108061-ENSG00000150594 CGP 9606 10:110919547-111080907
GeneTranscriptPositionBiotype
ENSG00000108061 (SHOC2)
soc-2 suppressor of clear homolog (C. elegans) 		ENST00000265277 (SHOC2-201) 110964125-111013664 protein_coding
ENST00000369452 (SHOC2-001) 110919547-111013667 protein_coding
ENST00000451838 (SHOC2-002) 110964851-111013666 protein_coding
ENST00000480155 (SHOC2-005) 110919593-110964524 processed_transcript
ENST00000489390 (SHOC2-003) 110919603-111011670 processed_transcript
ENST00000489783 (SHOC2-004) 110920003-110964729 processed_transcript
ENST00000497305 (SHOC2-006) 110965032-110985922 processed_transcript
ENSG00000150594 (ADRA2A)
adrenoceptor alpha 2A 		ENST00000280155 (ADRA2A-001) 111077163-111080907 protein_coding
ENSG00000234118 (RPL13AP6)
ribosomal protein L13a pseudogene 6 		ENST00000430133 (RPL13AP6-001) 110936622-110937233 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0006FA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024976-ENSMUSG00000033717 CGP 10090 19:53944306-54048982
GeneTranscriptPositionBiotype
ENSMUSG00000024976 (Shoc2)
soc-2 (suppressor of clear) homolog (C. elegans) 		ENSMUST00000025932 (Shoc2-201) 53944876-54033268 protein_coding
ENSMUST00000169861 (Shoc2-202) 53944306-54033268 protein_coding
ENSMUSG00000033717 (Adra2a)
adrenergic receptor, alpha 2a 		ENSMUST00000036700 (Adra2a-201) 54045182-54048982 protein_coding
ENSMUSG00000084957 (Bbip1)
BBSome interacting protein 1 		ENSMUST00000135402 (Bbip1-201) 53929677-53944627 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FA_0001ENSG00000108061ENST00000265277ENST00000369452ENST00000451838ENST00000480155ENST00000489390ENST00000489783ENST00000497305ENSG00000150594ENST00000280155ENSG00000234118ENST00000430133CIL_0006FA_0002ENSMUSG00000024976ENSMUST00000025932ENSMUST00000169861ENSMUSG00000033717ENSMUST00000036700ENSMUSG00000084957ENSMUST00000135402
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FA_0001ENSG00000108061ENST00000265277ENST00000369452ENST00000451838ENST00000489783ENSG00000150594ENST00000280155ENSG00000234118ENST00000430133CIL_0006FA_0002ENSMUSG00000024976ENSMUST00000025932ENSMUST00000169861ENSMUSG00000033717ENSMUST00000036700ENSMUSG00000084957ENSMUST00000135402
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108061 ENST00000265277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.654±0.00 4.174±0.00
ENST00000369452 13.550±0.00 5.989±0.00 3.742±0.00 11.601±0.92 11.425±0.41 10.084±0.21 5.410±1.12 5.356±1.65 6.004±3.14 8.595±3.34 4.471±3.21 7.921±2.88 3.692±0.63 12.462±3.14
ENST00000451838 N/A 3.765±0.00 N/A N/A 2.165±0.00 N/A N/A N/A 1.089±0.00 N/A N/A 7.585±0.00 1.763±0.38 8.294±3.07
ENST00000480155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489783 N/A N/A 2.207±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000150594 ENST00000280155 22.200±0.00 21.218±0.00 0.148±0.00 1.413±0.21 22.867±21.58 2.371±1.83 0.228±0.14 0.750±0.00 0.739±0.25 1.536±0.62 0.207±0.16 7.324±7.21 2.996±0.49 6.253±1.11
ENSG00000234118 ENST00000430133 0.390±0.00 1.669±0.00 2.033±0.00 0.172±0.00 0.292±0.00 N/A 0.244±0.10 N/A 0.260±0.14 0.636±0.35 N/A 0.725±0.61 0.122±0.00 0.423±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024976 ENSMUST00000025932 7.862±3.03 4.088±0.63 12.946±0.00 13.805±0.16 8.785±2.33 10.587±1.77 5.141±2.32 5.770±2.12 4.115±1.26 7.093±3.01 3.863±1.73 9.965±2.08 7.879±2.99 3.869±0.35
ENSMUST00000169861 N/A 2.639±0.39 N/A 3.698±0.00 8.199±5.59 3.891±1.15 N/A 5.307±0.69 4.251±1.47 N/A N/A 5.895±2.63 10.744±2.40 4.164±0.67
ENSMUSG00000033717 ENSMUST00000036700 1.193±0.20 0.202±0.09 0.136±0.04 3.769±1.13 2.944±1.36 15.703±2.28 0.054±0.03 0.777±0.09 0.125±0.11 0.646±0.05 0.143±0.10 2.596±0.93 0.368±0.20 0.176±0.15
ENSMUSG00000084957 ENSMUST00000135402 N/A N/A N/A 12.862±0.25 N/A N/A 3.534±0.55 3.055±0.37 4.561±0.67 3.128±0.00 8.492±1.24 7.844±0.72 6.417±0.00 12.485±0.53

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