C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 6C, cGMP specific, cone, alpha prime
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112329 Pde6c-202 ENSMUSG00000024992 10090 + 19:38132781-38183947 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaTestisENSMUST00000112329
Transcript ID Brain Liver Ovary Placenta Testis
ENSMUST00000112329 0.239±0.00 0.065±0.03 0.009±0.00 0.025±0.00 0.040±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000102 CIL_000102_0002 CGP 19:38116620-38183947
CIL_000103 CIL_000103_0002 CGP 19:38132781-38224138

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0007601 IMP visual perception
GO:0007603 IMP phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0030553 IEA cGMP binding
GO:0046549 IMP retinal cone cell development
GO:0046872 IEA metal ion binding
GO:0047555 IEA 3',5'-cyclic-GMP phosphodiesterase activity
GO:0050953 IMP sensory perception of light stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255266 PDE6A-001 protein_coding Homo_sapiens 0 265
ENST00000255622 PDE6B-001 protein_coding Homo_sapiens 0 215
ENST00000371447 PDE6C-001 protein_coding Homo_sapiens 0 2193
ENST00000429163 PDE6B-003 protein_coding Homo_sapiens 0 215
ENST00000465426 PDE6B-007 protein_coding Homo_sapiens 5e-18 95
ENST00000467152 PDE6B-004 retained_intron Homo_sapiens 6e-18 95
ENST00000471824 PDE6B-011 protein_coding Homo_sapiens 5e-19 99
ENST00000474251 PDE6B-005 retained_intron Homo_sapiens 5e-18 95
ENST00000476034 PDE6B-009 retained_intron Homo_sapiens 1e-17 95
ENST00000487902 PDE6B-006 protein_coding Homo_sapiens 2e-21 106
ENST00000496514 PDE6B-002 protein_coding Homo_sapiens 0 215
ENST00000508173 PDE6A-002 retained_intron Homo_sapiens 0 265
ENST00000613228 PDE6A-201 protein_coding Homo_sapiens 0 265
ENST00000617647 PDE6A-202 protein_coding Homo_sapiens 0 265

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