C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 16 (monocarboxylic acid transporters), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025161 Slc16a3 10090 + 11:120948480-120960868 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070653 Slc16a3-001 120948480-120958775 protein_coding
  ENSMUST00000100130 Slc16a3-201 120949067-120959000 protein_coding
  ENSMUST00000129473 Slc16a3-005 120949071-120956861 protein_coding
  ENSMUST00000133029 Slc16a3-003 120950688-120955273 protein_coding
  ENSMUST00000134540 Slc16a3-004 120955226-120956231 retained_intron
  ENSMUST00000140467 Slc16a3-006 120951138-120954212 processed_transcript
  ENSMUST00000154187 Slc16a3-002 120949053-120956747 protein_coding
  ENSMUST00000168579 Slc16a3-202 120949081-120960868 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070653ENSMUST00000100130ENSMUST00000129473ENSMUST00000154187ENSMUST00000168579
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070653 1.813±1.19 0.216±0.04 4.234±0.27 0.822±0.42 3.029±3.12 2.938±1.10 0.146±0.00 0.230±0.01 10.271±6.23 4.809±0.63 67.186±40.55 5.071±1.79 50.643±43.63 N/A
ENSMUST00000100130 0.562±0.03 N/A 1.565±0.43 0.498±0.12 0.883±0.00 0.996±0.10 0.338±0.08 0.272±0.05 3.217±0.20 N/A 22.660±0.00 1.024±0.46 5.016±0.00 0.584±0.00
ENSMUST00000129473 4.016±0.00 0.844±0.39 N/A 0.779±0.00 3.186±3.56 4.454±1.88 1.026±0.02 0.620±0.00 0.180±0.02 7.274±0.56 N/A 8.829±2.14 N/A N/A
ENSMUST00000154187 0.529±0.00 0.488±0.16 3.428±0.41 0.977±0.28 7.698±1.72 4.010±2.49 0.714±0.16 0.606±0.14 8.791±6.63 N/A 62.687±10.26 7.082±2.42 18.437±6.95 N/A
ENSMUST00000168579 0.271±0.10 0.093±0.02 N/A 0.130±0.03 0.164±0.01 0.438±0.05 0.117±0.04 0.088±0.01 0.070±0.02 N/A N/A 0.977±0.16 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019I CIL_00019I_0002 CGP 11:120826529-120960868
CIL_00043R CIL_00043R_0003 CGP 11:120948480-120991330

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0015293 IEA symporter activity
GO:0015355 IEA secondary active monocarboxylate transmembrane transporter activity
GO:0015629 IEA actin cytoskeleton
GO:0015718 IEA monocarboxylic acid transport
GO:0016021 IEA integral component of membrane
GO:0031965 IEA nuclear membrane
GO:0035879 IEA plasma membrane lactate transport
GO:0044822 IEA poly(A) RNA binding
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028583 SLC16A3 (1 of 2) solute carrier family 16 (monocarboxylate transporter), member 3 protein_coding Danio_rerio
ENSDARG00000045051 slc16a3 solute carrier family 16 (monocarboxylic acid transporters), member 3 protein_coding Danio_rerio
ENSG00000141526 SLC16A3 solute carrier family 16 (monocarboxylate transporter), member 3 protein_coding Homo_sapiens

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