C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: casein kinase 1, delta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141551 CSNK1D 9606 - 17:82239023-82273731 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269361 CSNK1D-022 82244680-82255516 nonsense_mediated_decay
  ENST00000314028 CSNK1D-001 82242667-82273731 protein_coding
  ENST00000392334 CSNK1D-002 82244362-82273697 protein_coding
  ENST00000398519 CSNK1D-006 82239727-82273428 protein_coding
  ENST00000403276 CSNK1D-005 82246018-82273431 nonsense_mediated_decay
  ENST00000577578 CSNK1D-028 82244362-82246591 processed_transcript
  ENST00000578194 CSNK1D-019 82253220-82273171 processed_transcript
  ENST00000578501 CSNK1D-025 82244394-82249496 retained_intron
  ENST00000578904 CSNK1D-009 82249578-82255546 processed_transcript
  ENST00000579308 CSNK1D-016 82265300-82273406 retained_intron
  ENST00000579316 CSNK1D-014 82255130-82273438 retained_intron
  ENST00000580061 CSNK1D-020 82255187-82266800 retained_intron
  ENST00000580446 CSNK1D-015 82252497-82273431 protein_coding
  ENST00000580565 CSNK1D-024 82246318-82249835 processed_transcript
  ENST00000580784 CSNK1D-010 82244645-82251414 nonsense_mediated_decay
  ENST00000581108 CSNK1D-023 82249239-82252527 retained_intron
  ENST00000581241 CSNK1D-007 82242673-82273369 retained_intron
  ENST00000581655 CSNK1D-018 82266708-82273251 processed_transcript
  ENST00000581660 CSNK1D-013 82253216-82273457 nonsense_mediated_decay
  ENST00000581737 CSNK1D-026 82244491-82249164 retained_intron
  ENST00000582844 CSNK1D-021 82249489-82273124 processed_transcript
  ENST00000584377 CSNK1D-008 82244301-82254679 retained_intron
  ENST00000584472 CSNK1D-012 82255164-82273466 processed_transcript
  ENST00000584672 CSNK1D-027 82239023-82248980 nonsense_mediated_decay
  ENST00000584913 CSNK1D-029 82244722-82245113 processed_transcript
  ENST00000585026 CSNK1D-017 82255438-82273400 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314028ENST00000392334ENST00000580446ENST00000581241ENST00000582844
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314028 28.405±0.00 0.997±0.00 14.068±0.00 12.274±0.00 6.167±4.40 11.783±0.00 8.949±7.93 N/A 7.891±6.89 13.616±0.00 19.200±4.77 31.252±0.00 23.059±3.74
ENST00000392334 N/A N/A N/A N/A 2.505±0.00 0.647±0.00 N/A N/A N/A N/A N/A 26.074±10.20 N/A
ENST00000580446 N/A N/A N/A N/A N/A N/A 2.293±0.00 N/A N/A N/A N/A N/A N/A
ENST00000581241 9.400±0.00 0.813±0.00 N/A N/A 1.112±0.00 0.337±0.00 N/A N/A N/A 1.280±0.00 10.989±0.00 N/A N/A
ENST00000582844 N/A 5.076±0.00 N/A N/A N/A N/A 2.129±0.00 6.027±0.00 N/A 4.122±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019I CIL_00019I_0001 CGP 17:82101460-82261129
CIL_00043R CIL_00043R_0002 CGP 17:82228397-82273731
CIL_00075P CIL_00075P_0001 CGP 17:82239023-82317602

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0001934 IMP positive regulation of protein phosphorylation
GO:0001948 IEA glycoprotein binding
GO:0004672 IEA protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005794 IDA Golgi apparatus
GO:0005813 IDA centrosome
GO:0005819 IDA spindle
GO:0005829 TAS cytosol
GO:0005876 IDA spindle microtubule
GO:0005886 IDA plasma membrane
GO:0006281 TAS DNA repair
GO:0006468 IEA protein phosphorylation
GO:0007165 TAS signal transduction
GO:0008152 IEA metabolic process
GO:0016055 IEA Wnt signaling pathway
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0032436 ISS positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032922 ISS circadian regulation of gene expression
GO:0042277 IEA peptide binding
GO:0042752 ISS regulation of circadian rhythm
GO:0048471 IDA perinuclear region of cytoplasm
GO:0050321 IEA tau-protein kinase activity
GO:0051219 IEA phosphoprotein binding
GO:0051225 IDA spindle assembly
GO:0090263 IMP positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006125 csnk1db casein kinase 1, delta b protein_coding Danio_rerio
ENSDARG00000008370 csnk1da casein kinase 1, delta a protein_coding Danio_rerio
ENSMUSG00000025162 Csnk1d casein kinase 1, delta protein_coding Mus_musculus

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