C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025204 Ndufb8 10090 - 19:44548572-44555440 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026222 Ndufb8-001 44550240-44555440 protein_coding
  ENSMUST00000164543 Ndufb8-008 44550255-44552880 retained_intron
  ENSMUST00000166557 Ndufb8-004 44554715-44555423 retained_intron
  ENSMUST00000167027 Ndufb8-006 44552840-44555404 protein_coding
  ENSMUST00000168083 Ndufb8-005 44550253-44555419 nonsense_mediated_decay
  ENSMUST00000168474 Ndufb8-003 44554701-44555426 retained_intron
  ENSMUST00000169181 Ndufb8-007 44553275-44555405 retained_intron
  ENSMUST00000169304 Ndufb8-009 44552622-44554986 protein_coding
  ENSMUST00000171415 Ndufb8-002 44548572-44555426 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026222ENSMUST00000164543ENSMUST00000167027ENSMUST00000168083ENSMUST00000169304ENSMUST00000171415
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026222 357.715±63.59 261.912±62.56 212.655±34.76 142.515±64.90 409.505±97.89 333.237±47.34 1028.320±115.80 698.125±105.47 224.082±34.93 151.657±17.13 495.564±26.78 317.808±151.15 108.771±45.88 224.617±105.44
ENSMUST00000164543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 75.205±14.08 96.276±8.06 N/A
ENSMUST00000167027 N/A N/A N/A 75.654±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 29.378±0.00 51.956±0.00
ENSMUST00000168083 N/A N/A N/A 30.959±0.00 510.379±0.00 N/A 194.499±0.00 N/A N/A 40.982±0.00 N/A 31.999±8.72 16.642±1.91 35.172±12.88
ENSMUST00000169304 N/A 114.463±14.49 N/A N/A 390.918±49.95 N/A N/A N/A 121.269±15.35 N/A N/A 75.128±6.92 N/A N/A
ENSMUST00000171415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.929±0.26 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0002 VISTA 19:44214132-44815870
CIL_00082U CIL_00082U_0002 VISTA 19:44330970-44933041
CIL_00082V CIL_00082V_0002 VISTA 19:44333644-44934226
CIL_00093R CIL_00093R_0002 VISTA 19:44370805-44971431
CIL_00093O CIL_00093O_0002 VISTA 19:44374626-44975238
CIL_0008BC CIL_0008BC_0002 VISTA 19:44398597-45000718
CIL_0008BD CIL_0008BD_0002 VISTA 19:44496521-45098014
CIL_0007U1 CIL_0007U1_0002 VISTA 19:44501251-45102539
CIL_0001CC CIL_0001CC_0003 CGP 19:44516957-44552831
CIL_0005DQ CIL_0005DQ_0002 CGP 19:44548572-44576274

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005747 IDA mitochondrial respiratory chain complex I
GO:0006120 IEA mitochondrial electron transport, NADH to ubiquinone
GO:0008137 IEA NADH dehydrogenase (ubiquinone) activity
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010113 ndufb8 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 protein_coding Danio_rerio
ENSG00000166136 NDUFB8 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa protein_coding Homo_sapiens
ENSG00000255339 NDUFB8 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial {ECO:0000313|Ensembl:ENSP00000456407} protein_coding Homo_sapiens

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