C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168083 Ndufb8-005 ENSMUSG00000025204 10090 - 19:44550253-44555419 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLungOvaryPlacentaTestisENSMUST00000168083
Transcript ID Brain Breast Heart Lung Ovary Placenta Testis
ENSMUST00000168083 30.959±0.00 510.379±0.00 194.499±0.00 40.982±0.00 31.999±8.72 16.642±1.91 35.172±12.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0002 VISTA 19:44214132-44815870
CIL_00082U CIL_00082U_0002 VISTA 19:44330970-44933041
CIL_00082V CIL_00082V_0002 VISTA 19:44333644-44934226
CIL_00093R CIL_00093R_0002 VISTA 19:44370805-44971431
CIL_00093O CIL_00093O_0002 VISTA 19:44374626-44975238
CIL_0008BC CIL_0008BC_0002 VISTA 19:44398597-45000718
CIL_0008BD CIL_0008BD_0002 VISTA 19:44496521-45098014
CIL_0007U1 CIL_0007U1_0002 VISTA 19:44501251-45102539
CIL_0001CC CIL_0001CC_0003 CGP 19:44516957-44552831
CIL_0005DQ CIL_0005DQ_0002 CGP 19:44548572-44576274

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005747 IDA mitochondrial respiratory chain complex I
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299166 NDUFB8-005 protein_coding Homo_sapiens 0 484
ENST00000370320 NDUFB8-003 protein_coding Homo_sapiens 0 361
ENST00000370322 NDUFB8-006 protein_coding Homo_sapiens 0 484
ENST00000466088 NDUFB8-004 retained_intron Homo_sapiens 0 363
ENST00000527595 NDUFB8-003 nonsense_mediated_decay Homo_sapiens 0 217
ENST00000529437 NDUFB8-007 retained_intron Homo_sapiens 0 217
ENST00000529568 NDUFB8-002 nonsense_mediated_decay Homo_sapiens 0 363
ENST00000557395 NDUFB8-001 nonsense_mediated_decay Homo_sapiens 0 361

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