C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001CC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000002916-ENSDARG00000010113 CGP 7955 12:49707841-49770336
GeneTranscriptPositionBiotype
ENSDARG00000002916 (sec31b)
Sec31 homolog B (S. cerevisiae) 		ENSDART00000014190 (sec31b-201) 49707841-49760529 protein_coding
ENSDART00000152895 (sec31b-002) 49758640-49761042 protein_coding
ENSDART00000153110 (sec31b-003) 49713958-49726004 processed_transcript
ENSDART00000153126 (sec31b-001) 49712531-49761038 protein_coding
ENSDARG00000010113 (ndufb8)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 		ENSDART00000105176 (ndufb8-001) 49763060-49770336 protein_coding
ENSDART00000148731 (ndufb8-002) 49763197-49764134 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0001CC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000075826-ENSG00000255339 CGP 9606 10:100486642-100529881
GeneTranscriptPositionBiotype
ENSG00000166135 (HIF1AN)
hypoxia inducible factor 1, alpha subunit inhibitor 		ENST00000299163 (HIF1AN-002) 100535859-100559998 protein_coding
ENST00000478787 (HIF1AN-003) 100536470-100545497 retained_intron
ENST00000526476 (HIF1AN-005) 100535915-100545968 nonsense_mediated_decay
ENST00000528044 (HIF1AN-006) 100536198-100540728 processed_transcript
ENST00000533589 (HIF1AN-004) 100529072-100546581 protein_coding
ENSG00000166136 (NDUFB8)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 		ENST00000299166 (NDUFB8-005) 100523740-100529864 protein_coding
ENST00000370320 (NDUFB8-003) 100523937-100529864 protein_coding
ENST00000370322 (NDUFB8-006) 100523743-100530000 protein_coding
ENST00000464651 (NDUFB8-001) 100523740-100526598 retained_intron
ENST00000466088 (NDUFB8-004) 100526049-100529862 retained_intron
ENST00000528425 (NDUFB8-010) 100524033-100529870 nonsense_mediated_decay
ENST00000529437 (NDUFB8-007) 100526717-100529883 retained_intron
ENST00000531189 (NDUFB8-009) 100529043-100529879 retained_intron
ENST00000531418 (NDUFB8-008) 100526744-100529879 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0001CC_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051984-ENSMUSG00000091471 CGP 10090 19:44516957-44552831
GeneTranscriptPositionBiotype
ENSMUSG00000025204 (Ndufb8)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 		ENSMUST00000026222 (Ndufb8-001) 44550240-44555440 protein_coding
ENSMUST00000164543 (Ndufb8-008) 44550255-44552880 retained_intron
ENSMUST00000166557 (Ndufb8-004) 44554715-44555423 retained_intron
ENSMUST00000167027 (Ndufb8-006) 44552840-44555404 protein_coding
ENSMUST00000168083 (Ndufb8-005) 44550253-44555419 nonsense_mediated_decay
ENSMUST00000168474 (Ndufb8-003) 44554701-44555426 retained_intron
ENSMUST00000169181 (Ndufb8-007) 44553275-44555405 retained_intron
ENSMUST00000169304 (Ndufb8-009) 44552622-44554986 protein_coding
ENSMUST00000171415 (Ndufb8-002) 44548572-44555426 protein_coding
ENSMUSG00000051984 (Sec31b)
Sec31 homolog B (S. cerevisiae) 		ENSMUST00000063632 (Sec31b-001) 44516957-44545864 protein_coding
ENSMUST00000111985 (Sec31b-002) 44517207-44545847 protein_coding
ENSMUST00000165758 (Sec31b-004) 44517644-44520593 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CC_0001ENSDARG00000002916ENSDART00000014190ENSDART00000152895ENSDART00000153110ENSDART00000153126ENSDARG00000010113ENSDART00000105176ENSDART00000148731CIL_0001CC_0002ENSG00000166135ENST00000299163ENST00000478787ENST00000526476ENST00000528044ENST00000533589ENSG00000166136ENST00000299166ENST00000370320ENST00000370322ENST00000464651ENST00000466088ENST00000528425ENST00000529437ENST00000531189ENST00000531418CIL_0001CC_0003ENSMUSG00000025204ENSMUST00000026222ENSMUST00000164543ENSMUST00000166557ENSMUST00000167027ENSMUST00000168083ENSMUST00000168474ENSMUST00000169181ENSMUST00000169304ENSMUST00000171415ENSMUSG00000051984ENSMUST00000063632ENSMUST00000111985ENSMUST00000165758
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CC_0001ENSDARG00000002916ENSDART00000014190ENSDART00000153126ENSDARG00000010113ENSDART00000105176ENSDART00000148731CIL_0001CC_0002ENSG00000166135ENST00000299163ENST00000533589ENSG00000166136ENST00000299166ENST00000464651ENST00000466088CIL_0001CC_0003ENSMUSG00000025204ENSMUST00000026222ENSMUST00000164543ENSMUST00000167027ENSMUST00000168083ENSMUST00000169304ENSMUST00000171415ENSMUSG00000051984ENSMUST00000063632ENSMUST00000111985
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002916 ENSDART00000014190 N/A N/A N/A 2.065±0.00 N/A N/A 1.062±0.00 0.595±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000152895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000153110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000153126 N/A N/A N/A N/A N/A N/A 8.708±0.00 11.327±0.00 0.420±0.00 N/A N/A N/A N/A N/A
ENSDARG00000010113 ENSDART00000105176 N/A N/A N/A 129.895±17.45 N/A N/A 222.304±154.74 69.393±0.00 13.893±0.00 N/A 158.884±0.00 N/A N/A N/A
ENSDART00000148731 N/A N/A N/A N/A N/A N/A 0.294±0.00 0.051±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166135 ENST00000299163 2.530±0.00 1.983±0.00 0.676±0.00 2.130±0.89 2.430±1.35 3.203±0.00 2.187±1.55 2.216±1.78 1.343±0.16 1.200±0.46 4.029±2.49 3.704±1.75 3.067±1.08 7.327±0.80
ENST00000478787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.107±0.00
ENSG00000166136 ENST00000299166 98.090±0.00 160.945±0.00 12.145±0.00 153.317±59.38 124.483±0.00 109.776±70.50 90.729±58.53 107.336±68.80 70.003±36.76 50.896±37.82 47.134±1.26 128.575±67.11 111.180±25.53 132.320±0.00
ENST00000370320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000370322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464651 N/A N/A 21.870±0.00 N/A N/A N/A N/A N/A N/A N/A 44.449±0.00 N/A N/A N/A
ENST00000466088 N/A N/A N/A N/A 10.150±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025204 ENSMUST00000026222 357.715±63.59 261.912±62.56 212.655±34.76 142.515±64.90 409.505±97.89 333.237±47.34 1028.320±115.80 698.125±105.47 224.082±34.93 151.657±17.13 495.564±26.78 317.808±151.15 108.771±45.88 224.617±105.44
ENSMUST00000164543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 75.205±14.08 96.276±8.06 N/A
ENSMUST00000166557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167027 N/A N/A N/A 75.654±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 29.378±0.00 51.956±0.00
ENSMUST00000168083 N/A N/A N/A 30.959±0.00 510.379±0.00 N/A 194.499±0.00 N/A N/A 40.982±0.00 N/A 31.999±8.72 16.642±1.91 35.172±12.88
ENSMUST00000168474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169304 N/A 114.463±14.49 N/A N/A 390.918±49.95 N/A N/A N/A 121.269±15.35 N/A N/A 75.128±6.92 N/A N/A
ENSMUST00000171415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.929±0.26 N/A N/A
ENSMUSG00000051984 ENSMUST00000063632 N/A 6.171±0.97 N/A N/A N/A N/A N/A N/A N/A N/A 11.540±0.64 4.793±1.92 N/A N/A
ENSMUST00000111985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.240±0.00 N/A 1.013±0.00
ENSMUST00000165758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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