C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter), member 20B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025243 Slc6a20b 10090 - 9:123593820-123632565 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026273 Slc6a20b-001 123593823-123632565 protein_coding
  ENSMUST00000163397 Slc6a20b-006 123607589-123632283 nonsense_mediated_decay
  ENSMUST00000164241 Slc6a20b-005 123609193-123632501 processed_transcript
  ENSMUST00000166800 Slc6a20b-002 123593820-123632399 retained_intron
  ENSMUST00000168824 Slc6a20b-003 123594829-123632327 nonsense_mediated_decay
  ENSMUST00000171122 Slc6a20b-004 123594823-123628562 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026273ENSMUST00000163397ENSMUST00000164241ENSMUST00000166800ENSMUST00000168824ENSMUST00000171122
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026273 N/A N/A N/A N/A 0.041±0.02 N/A N/A 41.939±8.02 0.030±0.02 0.031±0.01 N/A 0.168±0.14 0.176±0.01 0.148±0.00
ENSMUST00000163397 N/A 0.166±0.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.590±0.13 N/A N/A
ENSMUST00000164241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.429±0.00 N/A N/A
ENSMUST00000166800 0.034±0.02 0.036±0.01 0.014±0.00 0.101±0.05 0.029±0.01 0.069±0.02 0.013±0.01 11.347±3.52 0.146±0.10 0.055±0.01 0.016±0.01 0.070±0.05 0.037±0.04 N/A
ENSMUST00000168824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.514±0.09 N/A N/A
ENSMUST00000171122 0.018±0.00 N/A N/A 0.026±0.00 0.035±0.00 N/A N/A 70.538±14.09 N/A 0.034±0.00 0.015±0.00 0.439±0.34 0.141±0.09 0.631±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073G CIL_00073G_0002 CGP 9:123529882-123632565

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006810 TAS transport
GO:0006836 IEA neurotransmitter transport
GO:0016324 IDA apical plasma membrane
GO:0031526 IDA brush border membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000163817 SLC6A20 solute carrier family 6 (proline IMINO transporter), member 20 protein_coding Homo_sapiens

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