C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (proline IMINO transporter), member 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163817 SLC6A20 9606 - 3:45755450-45796535 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000353278 SLC6A20-002 45755450-45796470 protein_coding
  ENST00000358525 SLC6A20-001 45755450-45796535 protein_coding
  ENST00000413781 SLC6A20-007 45771217-45796535 protein_coding
  ENST00000456124 SLC6A20-201 45756004-45796483 protein_coding
  ENST00000470226 SLC6A20-006 45790301-45796360 processed_transcript
  ENST00000473146 SLC6A20-004 45758504-45772339 retained_intron
  ENST00000493980 SLC6A20-005 45759980-45765770 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000353278ENST00000358525ENST00000413781ENST00000456124ENST00000470226ENST00000473146ENST00000493980
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000353278 0.463±0.00 0.213±0.00 N/A N/A 0.023±0.00 0.030±0.02 N/A 0.011±0.00 N/A 1.771±0.94 0.029±0.01 0.367±0.00
ENST00000358525 N/A N/A 0.452±0.00 0.452±0.00 N/A N/A 0.581±0.00 N/A 0.338±0.00 5.472±0.00 N/A N/A
ENST00000413781 N/A N/A N/A N/A 0.319±0.00 N/A N/A N/A N/A N/A 0.047±0.00 N/A
ENST00000456124 N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A
ENST00000470226 N/A N/A N/A N/A N/A 0.207±0.00 N/A N/A N/A N/A N/A N/A
ENST00000473146 N/A N/A 0.484±0.00 0.316±0.00 0.089±0.00 N/A N/A N/A 0.030±0.00 N/A N/A N/A
ENST00000493980 N/A N/A N/A N/A 0.988±0.00 0.262±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073G CIL_00073G_0001 CGP 3:45689056-45796535

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003333 IDA amino acid transmembrane transport
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006811 TAS ion transport
GO:0006836 IEA neurotransmitter transport
GO:0006865 IDA amino acid transport
GO:0015171 IDA amino acid transmembrane transporter activity
GO:0015816 IMP glycine transport
GO:0015824 IMP proline transport
GO:0016021 IEA integral component of membrane
GO:0016324 ISS apical plasma membrane
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000025243 Slc6a20b solute carrier family 6 (neurotransmitter transporter), member 20B protein_coding Mus_musculus
ENSMUSG00000036814 Slc6a20a solute carrier family 6 (neurotransmitter transporter), member 20A protein_coding Mus_musculus

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