C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 20B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026273 Slc6a20b-001 ENSMUSG00000025243 10090 - 9:123593823-123632565 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverLungOvaryPlacentaTestisENSMUST00000026273
Transcript ID Breast Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000026273 0.041±0.02 41.939±8.02 0.030±0.02 0.031±0.01 0.168±0.14 0.176±0.01 0.148±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073G CIL_00073G_0002 CGP 9:123529882-123632565

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006810 TAS transport
GO:0006836 IEA neurotransmitter transport
GO:0016324 IDA apical plasma membrane
GO:0031526 IDA brush border membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353278 SLC6A20-002 protein_coding Homo_sapiens 0 1123
ENST00000358525 SLC6A20-001 protein_coding Homo_sapiens 0 1875
ENST00000413781 SLC6A20-007 protein_coding Homo_sapiens 0 741
ENST00000456124 SLC6A20-201 protein_coding Homo_sapiens 0 1781
ENST00000473146 SLC6A20-004 retained_intron Homo_sapiens 0 1122
ENST00000493980 SLC6A20-005 processed_transcript Homo_sapiens 0 479

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