C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105235 Smarcc2-203 ENSMUSG00000025369 10090 + 10:128459236-128490173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105235
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105235 14.273±3.00 30.189±4.27 18.392±1.42 48.804±14.99 24.010±11.11 30.792±3.12 3.846±0.94 26.687±1.24 19.783±2.96 21.189±2.78 2.458±0.61 30.732±10.61 12.678±4.39 36.169±14.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039G CIL_00039G_0002 CGP 10:128459236-128493875

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0016514 IDA SWI/SNF complex
GO:0017053 IEA transcriptional repressor complex
GO:0021882 IMP regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267064 SMARCC2-001 protein_coding Homo_sapiens 0 5262
ENST00000347471 SMARCC2-002 protein_coding Homo_sapiens 0 2405
ENST00000394023 SMARCC2-003 protein_coding Homo_sapiens 0 2407
ENST00000547356 SMARCC2-007 retained_intron Homo_sapiens 0 580
ENST00000548130 SMARCC2-014 retained_intron Homo_sapiens 0 900
ENST00000549209 SMARCC2-016 processed_transcript Homo_sapiens 0 488
ENST00000549757 SMARCC2-011 retained_intron Homo_sapiens 0 638
ENST00000550150 SMARCC2-005 retained_intron Homo_sapiens 0 385
ENST00000550164 SMARCC2-006 protein_coding Homo_sapiens 0 2857
ENST00000550519 SMARCC2-009 nonsense_mediated_decay Homo_sapiens 0 835
ENST00000550859 SMARCC2-010 processed_transcript Homo_sapiens 0 721
ENST00000552627 SMARCC2-008 retained_intron Homo_sapiens 0 457
ENST00000552674 SMARCC2-004 nonsense_mediated_decay Homo_sapiens 0 2182
ENST00000552931 SMARCC2-015 retained_intron Homo_sapiens 0 516

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