C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026433 Smarcc2-201 ENSMUSG00000025369 10090 + 10:128459236-128490173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000026433
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000026433 25.253±6.56 19.068±4.54 11.952±0.26 17.990±4.59 18.679±4.33 9.197±1.17 4.334±0.00 15.391±3.80 3.940±1.14 20.815±15.28 12.581±9.69 18.819±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039G CIL_00039G_0002 CGP 10:128459236-128493875

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0016514 IDA SWI/SNF complex
GO:0021882 IMP regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267064 SMARCC2-001 protein_coding Homo_sapiens 0 4324
ENST00000347471 SMARCC2-002 protein_coding Homo_sapiens 0 2405
ENST00000394023 SMARCC2-003 protein_coding Homo_sapiens 0 2407
ENST00000547356 SMARCC2-007 retained_intron Homo_sapiens 0 580
ENST00000548130 SMARCC2-014 retained_intron Homo_sapiens 0 900
ENST00000549209 SMARCC2-016 processed_transcript Homo_sapiens 0 488
ENST00000549757 SMARCC2-011 retained_intron Homo_sapiens 0 638
ENST00000550150 SMARCC2-005 retained_intron Homo_sapiens 0 385
ENST00000550164 SMARCC2-006 protein_coding Homo_sapiens 0 2311
ENST00000550519 SMARCC2-009 nonsense_mediated_decay Homo_sapiens 0 835
ENST00000550859 SMARCC2-010 processed_transcript Homo_sapiens 0 721
ENST00000552627 SMARCC2-008 retained_intron Homo_sapiens 0 457
ENST00000552674 SMARCC2-004 nonsense_mediated_decay Homo_sapiens 0 2290
ENST00000552931 SMARCC2-015 retained_intron Homo_sapiens 0 516

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