C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117634 Tspan4-002 ENSMUSG00000025511 10090 + 7:141476400-141493421 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENSMUST00000117634
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000117634 35.927±13.47 48.776±12.06 33.035±2.82 9.282±2.94 28.280±11.15 10.258±1.27 16.826±3.77 31.385±6.12 14.804±2.08 30.798±11.01 4.507±1.48 46.530±18.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003EQ CIL_0003EQ_0002 CGP 7:141471860-141493427
CIL_0003ER CIL_0003ER_0002 CGP 7:141475240-141539857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346501 TSPAN4-017 protein_coding Homo_sapiens 0 407
ENST00000397397 TSPAN4-001 protein_coding Homo_sapiens 0 869
ENST00000397404 TSPAN4-202 protein_coding Homo_sapiens 0 869
ENST00000397406 TSPAN4-203 protein_coding Homo_sapiens 0 869
ENST00000397408 TSPAN4-204 protein_coding Homo_sapiens 0 869
ENST00000397411 TSPAN4-006 protein_coding Homo_sapiens 0 867
ENST00000409531 TSPAN4-005 protein_coding Homo_sapiens 0 865
ENST00000409543 TSPAN4-007 protein_coding Homo_sapiens 0 885
ENST00000464987 TSPAN4-002 retained_intron Homo_sapiens 6e-28 130
ENST00000524895 TSPAN4-012 retained_intron Homo_sapiens 1e-28 130
ENST00000526055 TSPAN4-013 retained_intron Homo_sapiens 0 329
ENST00000527644 TSPAN4-010 protein_coding Homo_sapiens 0 588
ENST00000530404 TSPAN4-011 protein_coding Homo_sapiens 0 329
ENST00000532375 TSPAN4-018 protein_coding Homo_sapiens 1e-28 130

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