C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: choroidermia
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025531 Chm 10090 - X:113040593-113185517 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026607 Chm-001 113040593-113185517 protein_coding
  ENSMUST00000113388 Chm-002 113040595-113185517 protein_coding
  ENSMUST00000133469 Chm-004 113116289-113185509 processed_transcript
  ENSMUST00000135821 Chm-003 113062531-113185509 processed_transcript
  ENSMUST00000153417 Chm-005 113043174-113047579 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026607ENSMUST00000113388ENSMUST00000135821ENSMUST00000153417
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026607 0.477±0.14 1.316±0.00 1.780±0.52 2.311±1.08 0.613±0.33 0.884±0.06 0.917±0.35 1.004±0.43 0.980±0.38 1.765±0.07 3.128±0.36 3.095±1.79 2.816±0.88 0.080±0.02
ENSMUST00000113388 0.434±0.28 0.959±0.46 N/A N/A 0.649±0.16 1.379±0.50 0.165±0.00 0.801±0.06 0.816±0.11 2.252±0.00 0.614±0.00 0.580±0.30 N/A 0.180±0.09
ENSMUST00000135821 0.350±0.03 1.116±0.52 N/A 0.356±0.00 0.259±0.08 N/A N/A 0.185±0.00 0.207±0.08 0.405±0.09 N/A 0.401±0.12 N/A 0.080±0.01
ENSMUST00000153417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.702±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KH CIL_0003KH_0002 CGP X:112638431-113185517
CIL_0003LE CIL_0003LE_0002 CGP X:113040593-113836386

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0004663 IEA Rab geranylgeranyltransferase activity
GO:0005829 IEA cytosol
GO:0005968 IEA Rab-protein geranylgeranyltransferase complex
GO:0006612 IEA protein targeting to membrane
GO:0006886 IEA intracellular protein transport
GO:0008152 IEA metabolic process
GO:0017137 IEA Rab GTPase binding
GO:0018344 IEA protein geranylgeranylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003845 chm choroideremia (Rab escort protein 1) protein_coding Danio_rerio
ENSG00000188419 CHM choroideremia (Rab escort protein 1) protein_coding Homo_sapiens

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