C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choroidermia
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026607 Chm-001 ENSMUSG00000025531 10090 - X:113040593-113185517 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026607
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026607 0.477±0.14 1.316±0.00 1.780±0.52 2.311±1.08 0.613±0.33 0.884±0.06 0.917±0.35 1.004±0.43 0.980±0.38 1.765±0.07 3.128±0.36 3.095±1.79 2.816±0.88 0.080±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KH CIL_0003KH_0002 CGP X:112638431-113185517
CIL_0003LE CIL_0003LE_0002 CGP X:113040593-113836386

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0004663 IEA Rab geranylgeranyltransferase activity
GO:0005829 IEA cytosol
GO:0005968 IEA Rab-protein geranylgeranyltransferase complex
GO:0006612 IEA protein targeting to membrane
GO:0017137 IEA Rab GTPase binding
GO:0018344 IEA protein geranylgeranylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357749 CHM-001 protein_coding Homo_sapiens 0 1698
ENST00000366553 CHML-001 protein_coding Homo_sapiens 0 259
ENST00000467744 CHM-004 processed_transcript Homo_sapiens 4e-20 104
ENST00000483950 CHM-003 processed_transcript Homo_sapiens 0 224
ENST00000487515 CHM-005 processed_transcript Homo_sapiens 0 250
ENST00000615443 CHM-002 protein_coding Homo_sapiens 0 442

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