C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choroidermia
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113388 Chm-002 ENSMUSG00000025531 10090 - X:113040595-113185517 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000113388
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000113388 0.434±0.28 0.959±0.46 0.649±0.16 1.379±0.50 0.165±0.00 0.801±0.06 0.816±0.11 2.252±0.00 0.614±0.00 0.580±0.30 0.180±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KH CIL_0003KH_0002 CGP X:112638431-113185517
CIL_0003LE CIL_0003LE_0002 CGP X:113040593-113836386

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0004663 IEA Rab geranylgeranyltransferase activity
GO:0005968 IEA Rab-protein geranylgeranyltransferase complex
GO:0006886 IEA intracellular protein transport
GO:0008152 IEA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357749 CHM-001 protein_coding Homo_sapiens 0 1417
ENST00000366553 CHML-001 protein_coding Homo_sapiens 0 259
ENST00000467744 CHM-004 processed_transcript Homo_sapiens 4e-20 104
ENST00000483950 CHM-003 processed_transcript Homo_sapiens 0 224
ENST00000487515 CHM-005 processed_transcript Homo_sapiens 0 250
ENST00000615443 CHM-002 protein_coding Homo_sapiens 0 442

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