C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding protein, fox-1 homolog (C. elegans) 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025576 Rbfox3 10090 - 11:118489762-118911597 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017576 Rbfox3-002 118491155-118909572 protein_coding
  ENSMUST00000069343 Rbfox3-003 118491155-118911597 protein_coding
  ENSMUST00000103023 Rbfox3-001 118489764-118761041 protein_coding
  ENSMUST00000106278 Rbfox3-008 118491203-118909550 protein_coding
  ENSMUST00000117731 Rbfox3-007 118489762-118909550 protein_coding
  ENSMUST00000120061 Rbfox3-009 118491994-118909552 protein_coding
  ENSMUST00000128863 Rbfox3-005 118811278-118888689 processed_transcript
  ENSMUST00000134774 Rbfox3-006 118811280-118908005 processed_transcript
  ENSMUST00000136551 Rbfox3-004 118502842-118569910 protein_coding
  ENSMUST00000154746 Rbfox3-010 118496500-118507353 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017576ENSMUST00000069343ENSMUST00000103023ENSMUST00000106278ENSMUST00000117731ENSMUST00000120061ENSMUST00000136551ENSMUST00000154746
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017576 0.013±0.00 0.389±0.00 6.398±0.00 N/A N/A 0.083±0.02 0.008±0.00 0.032±0.02 0.024±0.00 N/A 0.021±0.00 0.103±0.04 N/A 0.026±0.00
ENSMUST00000069343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.122±0.00 N/A N/A
ENSMUST00000103023 0.014±0.00 N/A N/A N/A 0.078±0.02 0.059±0.00 0.017±0.00 0.070±0.05 0.080±0.03 0.137±0.00 0.010±0.00 0.229±0.11 0.127±0.00 0.032±0.00
ENSMUST00000106278 0.576±0.29 N/A N/A 2.958±0.00 0.020±0.00 0.140±0.01 N/A N/A 0.057±0.00 N/A N/A N/A N/A 0.323±0.00
ENSMUST00000117731 0.435±0.00 0.511±0.06 8.757±2.87 23.551±26.86 N/A 0.098±0.02 N/A N/A 0.022±0.00 N/A N/A 0.176±0.09 0.104±0.00 N/A
ENSMUST00000120061 0.187±0.00 0.295±0.01 N/A 2.058±0.00 N/A 0.154±0.00 N/A 0.057±0.00 0.056±0.00 N/A N/A 0.174±0.05 N/A 0.268±0.00
ENSMUST00000136551 N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154746 N/A N/A N/A 85.749±0.00 N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YN CIL_0002YN_0002 CGP 11:118476829-118911597
CIL_0002XY CIL_0002XY_0002 CGP 11:118489762-118992841

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0003677 IDA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043025 IDA neuronal cell body
GO:0043204 IDA perikaryon

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010083 rbfox3 RNA binding protein, fox-1 homolog (C. elegans) 3 protein_coding Danio_rerio
ENSDARG00000074310 rbfox3l RNA binding protein, fox-1 homolog 3, like protein_coding Danio_rerio
ENSDARG00000086696 RBFOX3 (3 of 3) RNA binding protein, fox-1 homolog (C. elegans) 3 protein_coding Danio_rerio
ENSG00000167281 RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 protein_coding Homo_sapiens

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