C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein, fox-1 homolog (C. elegans) 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103023 Rbfox3-001 ENSMUSG00000025576 10090 - 11:118489764-118761041 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103023
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103023 0.014±0.00 0.078±0.02 0.059±0.00 0.017±0.00 0.070±0.05 0.080±0.03 0.137±0.00 0.010±0.00 0.229±0.11 0.127±0.00 0.032±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YN CIL_0002YN_0002 CGP 11:118476829-118911597
CIL_0002XY CIL_0002XY_0002 CGP 11:118489762-118992841

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0003677 IDA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043025 IDA neuronal cell body
GO:0043204 IDA perikaryon

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000578998 RBFOX3-005 retained_intron Homo_sapiens 0 496
ENST00000580155 RBFOX3-004 protein_coding Homo_sapiens 0 1417
ENST00000581393 RBFOX3-006 retained_intron Homo_sapiens 0 553
ENST00000582043 RBFOX3-007 protein_coding Homo_sapiens 0 619
ENST00000582880 RBFOX3-011 protein_coding Homo_sapiens 0 204
ENST00000582894 RBFOX3-010 protein_coding Homo_sapiens 0 405
ENST00000583458 RBFOX3-002 protein_coding Homo_sapiens 0 1079
ENST00000584778 RBFOX3-003 protein_coding Homo_sapiens 0 1293

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